Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0213 ATGGATGTTACCTCTCTGGAACCAAATAACAACACCCAAACCGACCAATATCCTTTGCTGATGGAGCAGCCAGAAAGCCAGCATCAGCACATAATTGACATCACAAGGAATATTAATGCTTTATCCAGCTCATCTCATGTTGATCAACACCCTGAAATACATTTAGTACAGAATGAAGATCAATCATCTCGTGGTACACGAGTCCCTACTCATCAAACATCTTCCTCATCAACGAGAGATGGGGGGTATGGTCATCGCAGGAGTCCATTGAATTCTGGACTGTGGATTTCTGTTGAGCTTGTTGTCACCGTGAGTCAGATCATAGCATCTATTGTCGTTCTGTCATTGTCGAGGAATGAAAATCCGCAAGCTCCATTATTTGCATGGGTTGTGGGTTATGCATCTGGTTGTGTTGCTACTCTTCCTATTCTATACTGGCGTTATCGAAATCGTAATCGAAGTACTGAACAAGATATGTCTCAACAATCTCAAGGATCTTCTGGAAGTAATCCTCCACTACCTACCTCATATACTGCCATTTCTGATGCTCATGTTTCAGATGAGGAGAGCAGTCATGCTACAGAATCAGCTGCAAGAAACATTAGGATTTCTGGAGCTTTTGTTTCTAGGCTTAACGGATTAGTAGACCATTTCAAGATGGCCTTAGATTGCTTCTTTGCAGTTTGGTTTGTTGTGGGCAATGTGTGGATCTTTGGAGGTCACTCTTCTGCTTCTGATGCTCCAAAATTGTATAGGTTATGTATAGTGTTTCTTACCTTCAGCTGCATTGGATATGCTATGCCATTTATTTTATGTGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTGTTCTGGGCATTCGGGAGGATTTTTCTCAAACTAGAGGAGCAACAGTAGAGTCTATAAATGCTTTGCCAATCTACAAGTTCAATTTGAAGAAAAATGAACATAGTGATGGTCAAGATGTCAACACAGCTATAGATGAAGGTGGGATATTGGCTGTAGGGACAGAAAAGGAGCGGGCCATATCAGGAGAAGATGCTGCTTGTTGCATTTGCTTGACAAAATATGCAGACGATGATGAGCTTAGGGAGCTACCCTGTTTTCATTTCTTTCATGTAGAGTGTGTTGATAAATGGTTAAAGATAAACGCATCCTGTCCTCTTTGTAAAAGTGATGTTGGCAAGGTTAGTGGAGTGTCCCCTTCAGCGAGGGACTCCAGTCAGCATTAG 1236 0.4175 MDVTSLEPNNNTQTDQYPLLMEQPESQHQHIIDITRNINALSSSSHVDQHPEIHLVQNEDQSSRGTRVPTHQTSSSSTRDGGYGHRRSPLNSGLWISVELVVTVSQIIASIVVLSLSRNENPQAPLFAWVVGYASGCVATLPILYWRYRNRNRSTEQDMSQQSQGSSGSNPPLPTSYTAISDAHVSDEESSHATESAARNIRISGAFVSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHSSASDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQTRGATVESINALPIYKFNLKKNEHSDGQDVNTAIDEGGILAVGTEKERAISGEDAACCICLTKYADDDELRELPCFHFFHVECVDKWLKINASCPLCKSDVGKVSGVSPSARDSSQH 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0213 411 MobiDBLite consensus disorder prediction 58 82 - -
Glsi06g0213 411 ProSiteProfiles Zinc finger RING-type profile. 351 392 IPR001841 -
Glsi06g0213 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 399 IPR013083 -
Glsi06g0213 411 SUPERFAMILY RING/U-box 344 399 - -
Glsi06g0213 411 SMART ringv_2 350 392 IPR011016 GO:0008270
Glsi06g0213 411 Pfam Ring finger domain 350 392 IPR001841 -
Glsi06g0213 411 FunFam E3 ubiquitin-protein ligase 334 401 - -
Glsi06g0213 411 SMART ring_2 351 391 IPR001841 -
Glsi06g0213 411 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 395 - -
Glsi06g0213 411 MobiDBLite consensus disorder prediction 56 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0213 Glsi-ChrGlsi06 1439257 1441691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0213 1 402 C3H Transcription Factor Family AT1G80400 60.337 1.96e-172 486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0213 06 1439257 1441691 Glsi06g0213 06 1439257 1441691 ECH