Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0211 ATGTACGTGAAAGTTAGCATGGATGGGGCTCCTTTCTTGCGTAAAATTGATCTGGGCATGCATAAGGGATACTCAGATCTTGCCATGGCCTTGGAGAAGCTCTTCGGTTGCTATGGAATATTCGGCGAGGAGTTGAAGGATGCGGACAATTCTGAACACGTTCCCATTTATGAGGACAAAGACGGTGACTGGATGCTGGTTGGAGATGTCCCTTGGGAAATGTTTATTGAGTCATGCAAGAGGTTGAGGATAATGAGGAAAGCGGATGCAAAGGGCTTTGGTCTGCAACCAAAAGGGTCTCTAAAGGGATTTATAGAAGGCGTGATGACAAAGGGAAAGATATAG 345 0.458 MYVKVSMDGAPFLRKIDLGMHKGYSDLAMALEKLFGCYGIFGEELKDADNSEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMRKADAKGFGLQPKGSLKGFIEGVMTKGKI 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0211 114 FunFam Auxin-responsive protein 1 97 - -
Glsi06g0211 114 Gene3D - 1 98 - -
Glsi06g0211 114 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 90 IPR003311 GO:0005634|GO:0006355
Glsi06g0211 114 ProSiteProfiles PB1 domain profile. 1 89 IPR000270 GO:0005515
Glsi06g0211 114 SUPERFAMILY CAD & PB1 domains 1 85 - -
Glsi06g0211 114 Pfam AUX/IAA family 1 93 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0211 Glsi-ChrGlsi06 1428546 1431387 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0211 4 91 B3 DNA Binding Superfamily AT4G23980 42.045 4.86e-13 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi06g0211 AUX_IAA 2.2e-39 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g0255 07 1669202 1671526 Glsi06g0211 06 1428546 1431387 CCT
Glsi06g0211 06 1428546 1431387 Glsi06g0211 06 1428546 1431387 ECH