Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0210 ATGTCACCGGCCGAACAATCCGACGTCGTCGTCGGCCTGAACTTCAAGGAGACTGAGCTCACCTTGGGCCTTCCCGGTGCTAAAACAGGCACAAAACGTGGCTTCTCAGAGACCGTTGATCTTAATCTAGGTAGAAACCGAGCGACTGAGAAATCGGAAGGCAATAATGATGGTCTTGGCTCTACTGCCTCAACTAAATCTCCGGCACCAAAGGCACAGATGGTGGGGTGGCCGCCGGTGAGGGCGAATAGGAAGACCGCGATGAAGAGTTGCAAGTACGTCAAGGTGGCTGTAGACGGAGCTCCATATCTCAGAAAAGTGGATCTTGAAATGTACCGGAGTTATGAAGAACTTCTGAAGGCTTTAGAGAGCATGTTTTGTTGCTTGACCATCCGCGATCATTTGAATGAGAGGAAGCTTATGGACCCTGGAAATGGAGTGGAATACGTACCCACCTATGAGGACAAAGATGGTGACTGGATGATGGTTGGGGATGTTCCCTGGAAGATGTTTGTTGAATCATGCAAAAGAATAAGGTTGATGATTAGCTCGGAGGCCATTGGCTTAGCTCCGAGATGTGCTTCAAAGTGA 591 0.4924 MSPAEQSDVVVGLNFKETELTLGLPGAKTGTKRGFSETVDLNLGRNRATEKSEGNNDGLGSTASTKSPAPKAQMVGWPPVRANRKTAMKSCKYVKVAVDGAPYLRKVDLEMYRSYEELLKALESMFCCLTIRDHLNERKLMDPGNGVEYVPTYEDKDGDWMMVGDVPWKMFVESCKRIRLMISSEAIGLAPRCASK 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0210 196 MobiDBLite consensus disorder prediction 53 69 - -
Glsi06g0210 196 ProSiteProfiles PB1 domain profile. 91 185 IPR000270 GO:0005515
Glsi06g0210 196 FunFam Auxin-responsive protein 86 193 - -
Glsi06g0210 196 Gene3D - 85 195 - -
Glsi06g0210 196 MobiDBLite consensus disorder prediction 42 75 - -
Glsi06g0210 196 SUPERFAMILY CAD & PB1 domains 85 182 - -
Glsi06g0210 196 Pfam AUX/IAA family 27 192 IPR033389 -
Glsi06g0210 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 188 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0210 Glsi-ChrGlsi06 1422466 1423626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0210 61 185 B3 DNA Binding Superfamily AT2G46530 31.200 4.56e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi06g0210 AUX_IAA 2.3e-56 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0210 06 1422466 1423626 Glsi06g0210 06 1422466 1423626 ECH