Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0166 ATGGTGCAATCAAAGAAATTCAGAGGTGTCAGGCAACGCCATTGGGGCTCATGGGTTTCTGAGATTCGTCATCCATTATTGAAAAGGAGGGTTTGGCTTGGGACATTTGAAACTGCTGAAGATGCAGCTAGAGCATATGATGAGGCAGCCATTTTGATGAGCGGTAGAAACGCCAAAACCAACTTCCCAGTCCACAATGGTCAAATGGGCAATCTCACTTCTTCTAATACTACTACTACTACTACTTCTTCTTCCACAACTTTGTCTAAAGTTCTCAGAGCGAAGCTTCGCAAGTGCTGCAAATCTCCATCCCCTTCTCTCACTTGCCTAAGGCTAGACACTGAGAATTCTCACATTGGAATCTGGCAGAAGCGAGCTGGGCTTCACTCTGACTCAAACTGGGTTATGATGGTTGAGTTAGAAAGAAAGAATCTTGGAGCTTCTGAGCAAGGATTTCCTGTACCAGATGCGCCAGAGAGGGTAAAACCAGACGGCAATAAGTTGGATGAGGAGGAGAGAATAGCCTTGCAGATGATAGAAGAACTTCTTAATCGGAATTAA 561 0.4474 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEDAARAYDEAAILMSGRNAKTNFPVHNGQMGNLTSSNTTTTTTSSSTTLSKVLRAKLRKCCKSPSPSLTCLRLDTENSHIGIWQKRAGLHSDSNWVMMVELERKNLGASEQGFPVPDAPERVKPDGNKLDEEERIALQMIEELLNRN 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0166 186 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Glsi06g0166 186 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Glsi06g0166 186 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Glsi06g0166 186 FunFam Ethylene-responsive transcription factor 2 5 65 - -
Glsi06g0166 186 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Glsi06g0166 186 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Glsi06g0166 186 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Glsi06g0166 186 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Glsi06g0166 186 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Glsi06g0166 186 MobiDBLite consensus disorder prediction 148 169 - -
Glsi06g0166 186 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0166 Glsi-ChrGlsi06 1156483 1157208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0166 1 186 AP2-EREBP Transcription Factor Family AT1G15360 63.682 4.51e-80 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi06g0166 AP2 4.2e-12 CL0081