Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0164 ATGGCACAAATTTTGCTACATGGGAATCTCCATGTCACGATCTATGAGGTGGATAAGCTGAAAACTGGTGGTGGCAATATTTTCAACAAGCTCAAGGAACATTTGGAGGAGACAGTTGGTTTTGGAAAAGGAGTTACCAGACTATATGCAACGATTGATCTTGAAAAGGCAAGAGTGGGAAGGACAAGAATTCTAGAACGTGAACATTCCAACCCTAGGTGGTATGAGTCTTTTCATATTTATTGTGCTCATATGGCTTCAAATGTTGTATTCACTGTGAAAGATGATGATCCTATTGGGGCGACATTAATTGGAAGAGCATATGTGCCTGTTGAGGAAATCTTGGATGGTGAAGAAATAGATAGATGGGTTGAAATCTTGGATGAGCACAAGAATCCCATACATGGGAATTCAAAGATCCATGTGAAGATGCAATATTTTGATGTTGCAAAAGACCGCAGCTGGGGTCGTGGTGTTAGAAGTCCTAAATTTCCTGGAGTTCCCTATACTTTCTTCTCACTAAGACAAGGATGTAAGGTCTCTCTGTACCAAGATTCTCATATCCCAGATAATTTTGTCCCTAAAATATCTCTTGCTGGAGGCAAGAATTATGAGCCTCATAGATGCTGGGAGGATGTTTTTGATGCAATCACTAATGCAAAGCACTTTATATACATTACTGGCTGGTCTGTTTATACTGAAATTTCCTTGGTAAGGGATTCTAGAAGGCCAAAGCCTGGGGGAGACATAACACTTGGTGAGCTTCTCAAGAAAAAGGCAAGTGAAGGTGTCAGGGTCTTAATGCTTGTTTGGGATGATAGAACATCCGTCGGTTTGTTAAAAAAGGATGGATTGATGGCTACTCATGATGAAGAAACCGAGCATTATTTCCAGAACACTGATGTTCATTGTGTTTTATGCCCCCGTAATCCTGATGATGGTGGAAGCATCATTCAGGATTTGGAAGTTTCCGCCATGTTCACCCATCACCAGAAGATTGTGGTGGTGGACAGTGAGTTGCCAAGTAGAGGATCAGATCAGCGAAGAATTGTTAGTTTTGTTGGTGGTATTGATCTATGTGACGGAAGATATGATACTCCCTTCCATTCACTTTTCAGAACCCTGGACACAGCACACCATGATGACTTTCACCAACCCAATTTTCCTGGTGCTGCAATCACAAAAGGCGGTCCCAGGGAACCTTGGCATGATATTCACTCCCGGCTTGAAGGACCCATTGCTTGGGACGTTTTGTTTAACTTTGAGCAGAGATGGAGGAAGCAAGGCGGGAAGGATTTACTTGTTCAGTTGAGAGAGCTTCAAGATGTTATTATTCCTCCATCTCCAGTAATGTTTCCTGATGATCAGGAGACGTGGAATGTTCAGTTATTTAGATCTATCGATGGTGGGGCTGCTTTTGGATTCCCAGAGACTCCTGAAGATGCTGCAAAAGCTGGGCTTATTAGTGGGAAGGATAATATCATAGATCGAAGTATTCAAGATGGTTATATTAATGCCATTCGACGAGCAAAGAATTTTATCTATATTGAAAATCAGTACTTCCTTGGAAGCTCTTTTGCCTGGAGCGCTGATGGTATCAAGCCTGAGGACATTAATGCTTCGCATGTAATCCCAAAGGAATTATCACTTAAAATTGTTAGTAAGATTGAAGCGGGGGAAAGGTTCACTGTATATGTTGTGATGCCAATGTGGCCAGAGGGGATCCCAGAAAGTGCATCGGTGCAGGCAATATTGGACTGGCAGAGGAGGACAATGGAGATGATGTACAAAGATGTAATTCAGGCGCTCAAGGCCAAGGGAATTGAAGAAGATCCTCGGAACTATTTGACATTCTTCTGCCTTGGTAATCGGGAGTTGAAGAAACCCGGAGAGTATGAGCCTTCAGAAAGGCCAGATCCTGATTCAGATTACATGAGAGCCCAAGAGGCCCGGCGCTTCATGATTTATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATCGTAGGATCTGCCAACATTAACCAGAGATCAATGGATGGTGCGAGGGACTCAGAGATAGCCATGGGTGCTTATCAACCCTATCATTTGGCTAACAGGCAGCCTGCGCGGGGCCAGATCCATGGTTTTCGCTTGTCATTGTGGTACGAGCACCTTGGCATGCTTCATGACTCCTTCCTCCGGCCTGAAAGTGAAGAGTGTATTAGGAAGGTAAACCAGATTGCTGAGAAGTATTGGGATCTTTATTCAAGCGAGTCACTCGAACACGACCTTCCTGGACACCTTCTCCGGTATCCTGTTGGGATTGCCAGTGAAGGAGATATCACAGAGCTGCCAGGATTTGAATTTTTCCCAGACACCAGGGCTCGTGTTCTTGGTGGCAAAGCTGACTACATGCCACCAATCCTTACTACATGA 2424 0.4369 MAQILLHGNLHVTIYEVDKLKTGGGNIFNKLKEHLEETVGFGKGVTRLYATIDLEKARVGRTRILEREHSNPRWYESFHIYCAHMASNVVFTVKDDDPIGATLIGRAYVPVEEILDGEEIDRWVEILDEHKNPIHGNSKIHVKMQYFDVAKDRSWGRGVRSPKFPGVPYTFFSLRQGCKVSLYQDSHIPDNFVPKISLAGGKNYEPHRCWEDVFDAITNAKHFIYITGWSVYTEISLVRDSRRPKPGGDITLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETEHYFQNTDVHCVLCPRNPDDGGSIIQDLEVSAMFTHHQKIVVVDSELPSRGSDQRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVQLRELQDVIIPPSPVMFPDDQETWNVQLFRSIDGGAAFGFPETPEDAAKAGLISGKDNIIDRSIQDGYINAIRRAKNFIYIENQYFLGSSFAWSADGIKPEDINASHVIPKELSLKIVSKIEAGERFTVYVVMPMWPEGIPESASVQAILDWQRRTMEMMYKDVIQALKAKGIEEDPRNYLTFFCLGNRELKKPGEYEPSERPDPDSDYMRAQEARRFMIYVHAKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLANRQPARGQIHGFRLSLWYEHLGMLHDSFLRPESEECIRKVNQIAEKYWDLYSSESLEHDLPGHLLRYPVGIASEGDITELPGFEFFPDTRARVLGGKADYMPPILTT 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0164 807 Pfam Phospholipase D C terminal 726 796 IPR024632 -
Glsi06g0164 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824
Glsi06g0164 807 PANTHER PHOSPHOLIPASE D 4 795 IPR015679 -
Glsi06g0164 807 Pfam Phospholipase D Active site motif 326 363 IPR001736 GO:0003824
Glsi06g0164 807 Pfam Phospholipase D Active site motif 654 680 IPR001736 GO:0003824
Glsi06g0164 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824
Glsi06g0164 807 CDD PLDc_pPLDalpha_1 200 377 - -
Glsi06g0164 807 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Glsi06g0164 807 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Glsi06g0164 807 SMART C2_3c 9 123 IPR000008 -
Glsi06g0164 807 SUPERFAMILY Phospholipase D/nuclease 484 737 - -
Glsi06g0164 807 SMART pld_4 653 680 IPR001736 GO:0003824
Glsi06g0164 807 SMART pld_4 325 363 IPR001736 GO:0003824
Glsi06g0164 807 FunFam Phospholipase D delta 200 443 - -
Glsi06g0164 807 CDD PLDc_pPLDalpha_2 491 700 - -
Glsi06g0164 807 Pfam C2 domain 8 126 IPR000008 -
Glsi06g0164 807 SUPERFAMILY Phospholipase D/nuclease 151 445 - -
Glsi06g0164 807 CDD C2_plant_PLD 2 147 - -
Glsi06g0164 807 Gene3D C2 domain 6 155 IPR035892 -
Glsi06g0164 807 FunFam Phospholipase D 466 699 - -
Glsi06g0164 807 PIRSF PLD_plant 1 807 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Glsi06g0164 807 Gene3D Endonuclease Chain A 198 442 - -
Glsi06g0164 807 Gene3D Endonuclease Chain A 474 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0164 Glsi-ChrGlsi06 1143278 1147123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0164 1 807 Phospholipase D Gene Family (Wang group) AT3G15730 80.741 0.0 1413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0164 06 1143278 1147123 Glsi07g0195 07 1250102 1252857 CCT
Glsi07g0195 07 1250102 1252857 Glsi06g0164 06 1143278 1147123 ECH
Glsi08g1590 08 11397724 11400206 Glsi06g0164 06 1143278 1147123 ECH
Glsi06g0164 06 1143278 1147123 Glsi06g0164 06 1143278 1147123 ECH