LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi06g0145	ATGGCTTTTTACTCAATCTTCTGTTGTGGAAAGGGTTCGGATCGCAAATCACGAGGGAAGGCAAAACCTACATGGCGGGTGTTTTCTTTAAAGGAGCTACACTCAGCTACAAATAATTTCAACTATGATAATAAGCTTGGAGAAGGGGGATTTGGAAGTGTTTACTGGGGTCAGCTTTGGGATGGATCACAAATTGCAGTGAAAAGATTGAAAGTTTGGAGCAACAAAGCAGATATGGAATTTGCTGTGGAAGTTGAGATATTGGCAAGAGTACGACACAAGAATCTTCTTAGTCTACGTGGCTATTGTGCTGAAGGGCAGGAACGGTTAATTGTATATGACTATATGTCAAATTTGAGCCTGCTTTCCCATCTTCATGGACAGCACTCAGCAGAATGCCTTCTTGATTGGAAACGACGGATGAATATTGCAGTTGGGTCTGCAGAGGGAATTGCATATCTCCACCACCAAGCAACTCCACACATCATCCACAGAGATATTAAAGCAAGCAATGTATTATTGGATGCAGATTTCCAAGCTCAGGTTGCTGACTTTGGTTTTGCTAAGTTGATCCCTGATGGGGCAACACACGTGACTACAAGAGTTAAGGGTACCCTTGGCTACCTTGCACCAGAGTATGCTATGTTAGGTAAAGCATCGGAGAGTTGTGATGTCTATAGTTTTGGAATTCTCTTGCTAGAACTTGCTAGTGGCAGGAAACCAATTGAAAAGCTGAGTGCAACAATGAAGCGGTCAATAACTGATTGGGCACTACCATTGGCTTGTGAGAAGAAATTTATTGAACTTGCAGATCCAAGACTAAATGGTGATTATGTGGAGGAAGAGCTTAAAAGAGTTATTTATGTTTCACTCCTGTGCGCTCAGAATCAGCCTGAGGGGAGACCTACCATGCTTGATGTGGTAGAGCTACTGAAGGGAGAATCTAAAGACAAGTTTTCTCAGCTAGAGAATAATGAACTGTTTAGAAGCCCTCCATCTGTAGATTACAATGACAGGACAACAACTGCTGAAGATAGTTCTGATTTCATATCAGAAGAGACTGAATCAAAATCTGAGTTGAAAGAGAATTCTGGGCCATTAACTATGCAAAAAAGCTGA	1119	0.4173	MAFYSIFCCGKGSDRKSRGKAKPTWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFAVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMSNLSLLSHLHGQHSAECLLDWKRRMNIAVGSAEGIAYLHHQATPHIIHRDIKASNVLLDADFQAQVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELASGRKPIEKLSATMKRSITDWALPLACEKKFIELADPRLNGDYVEEELKRVIYVSLLCAQNQPEGRPTMLDVVELLKGESKDKFSQLENNELFRSPPSVDYNDRTTTAEDSSDFISEETESKSELKENSGPLTMQKS	372

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi06g0145	372	Pfam	Protein kinase domain	41	308	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g0145	372	MobiDBLite	consensus disorder prediction	341	360	-	-
	Glsi06g0145	372	ProSiteProfiles	Protein kinase domain profile.	40	320	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g0145	372	SMART	serkin_6	40	350	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g0145	372	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	6	356	-	-
	Glsi06g0145	372	MobiDBLite	consensus disorder prediction	322	372	-	-
	Glsi06g0145	372	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	162	174	IPR008271	GO:0004672\|GO:0006468
	Glsi06g0145	372	Gene3D	Transferase(Phosphotransferase) domain 1	116	329	-	-
	Glsi06g0145	372	MobiDBLite	consensus disorder prediction	324	340	-	-
	Glsi06g0145	372	FunFam	PTI1-like tyrosine-protein kinase At3g15890	116	327	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi06g0145	Glsi-ChrGlsi06	1061649	1064912	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi06g0145	28	314	Trihelix Transcription Factor Family	AT1G70460	50.859	8.46e-94	293

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XV	Glsi06g0145		Pkinase	4.6e-43	CL0016

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