Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0145 ATGGCTTTTTACTCAATCTTCTGTTGTGGAAAGGGTTCGGATCGCAAATCACGAGGGAAGGCAAAACCTACATGGCGGGTGTTTTCTTTAAAGGAGCTACACTCAGCTACAAATAATTTCAACTATGATAATAAGCTTGGAGAAGGGGGATTTGGAAGTGTTTACTGGGGTCAGCTTTGGGATGGATCACAAATTGCAGTGAAAAGATTGAAAGTTTGGAGCAACAAAGCAGATATGGAATTTGCTGTGGAAGTTGAGATATTGGCAAGAGTACGACACAAGAATCTTCTTAGTCTACGTGGCTATTGTGCTGAAGGGCAGGAACGGTTAATTGTATATGACTATATGTCAAATTTGAGCCTGCTTTCCCATCTTCATGGACAGCACTCAGCAGAATGCCTTCTTGATTGGAAACGACGGATGAATATTGCAGTTGGGTCTGCAGAGGGAATTGCATATCTCCACCACCAAGCAACTCCACACATCATCCACAGAGATATTAAAGCAAGCAATGTATTATTGGATGCAGATTTCCAAGCTCAGGTTGCTGACTTTGGTTTTGCTAAGTTGATCCCTGATGGGGCAACACACGTGACTACAAGAGTTAAGGGTACCCTTGGCTACCTTGCACCAGAGTATGCTATGTTAGGTAAAGCATCGGAGAGTTGTGATGTCTATAGTTTTGGAATTCTCTTGCTAGAACTTGCTAGTGGCAGGAAACCAATTGAAAAGCTGAGTGCAACAATGAAGCGGTCAATAACTGATTGGGCACTACCATTGGCTTGTGAGAAGAAATTTATTGAACTTGCAGATCCAAGACTAAATGGTGATTATGTGGAGGAAGAGCTTAAAAGAGTTATTTATGTTTCACTCCTGTGCGCTCAGAATCAGCCTGAGGGGAGACCTACCATGCTTGATGTGGTAGAGCTACTGAAGGGAGAATCTAAAGACAAGTTTTCTCAGCTAGAGAATAATGAACTGTTTAGAAGCCCTCCATCTGTAGATTACAATGACAGGACAACAACTGCTGAAGATAGTTCTGATTTCATATCAGAAGAGACTGAATCAAAATCTGAGTTGAAAGAGAATTCTGGGCCATTAACTATGCAAAAAAGCTGA 1119 0.4173 MAFYSIFCCGKGSDRKSRGKAKPTWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFAVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMSNLSLLSHLHGQHSAECLLDWKRRMNIAVGSAEGIAYLHHQATPHIIHRDIKASNVLLDADFQAQVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELASGRKPIEKLSATMKRSITDWALPLACEKKFIELADPRLNGDYVEEELKRVIYVSLLCAQNQPEGRPTMLDVVELLKGESKDKFSQLENNELFRSPPSVDYNDRTTTAEDSSDFISEETESKSELKENSGPLTMQKS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0145 372 Pfam Protein kinase domain 41 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0145 372 MobiDBLite consensus disorder prediction 341 360 - -
Glsi06g0145 372 ProSiteProfiles Protein kinase domain profile. 40 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0145 372 SMART serkin_6 40 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0145 372 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 356 - -
Glsi06g0145 372 MobiDBLite consensus disorder prediction 322 372 - -
Glsi06g0145 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Glsi06g0145 372 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Glsi06g0145 372 MobiDBLite consensus disorder prediction 324 340 - -
Glsi06g0145 372 FunFam PTI1-like tyrosine-protein kinase At3g15890 116 327 - -
Glsi06g0145 372 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Glsi06g0145 372 CDD STKc_IRAK 46 313 - -
Glsi06g0145 372 SUPERFAMILY Protein kinase-like (PK-like) 22 311 IPR011009 -
Glsi06g0145 372 Gene3D Phosphorylase Kinase; domain 1 11 115 - -
Glsi06g0145 372 FunFam PTI1-like tyrosine-protein kinase At3g15890 12 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0145 Glsi-ChrGlsi06 1061649 1064912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0145 28 314 Trihelix Transcription Factor Family AT1G70460 50.859 8.46e-94 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Glsi06g0145 Pkinase 4.6e-43 CL0016