Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0139 ATGCCGGAGCTGCCGGAGGTAGAGGCGGCAAGAAGAGCCGTAGAGGAGAACTGTATTGGCAAGAAGATAAAGAAGTCGATTATAGCTGATGATCCCAAAGTCATTGATGGAGTCTCTCGCTCGGAGTTCGAGGTTTCTCTCTTGGGCAAGACCATCGTCGCAGCGCGCCGTAAGGGCAAGAACATGTGGCTTGAGCTTGATTCCCCTCCATTCCCTACCTTCCAATTCGGCATGGCTGGTGCTATATACATTAAGGGTGTTGCAGTTACAAAGTACAAAAGGTCTGCTGTAAATGACGTGGATGAGTGGCCTTCCAAATATTCGAAGTTATTTATTGAGCTAGATGACGGTTTGGAGTTGTCTTTCACTGACAAAAGGCGGTTTGCTAGAGTTCGCCTACTCAATAATCCAACATCAGTACCTCCCATATCTGAGCTTGGTCCTGACGCACTTTTGGAACCTATGACACTTGAAGAATTCACTGAGTCTTTGCACAAGAAAAAAACTGAAATCAAGGCTTTATTACTTGATCAAAGTTTTGTTTCTGGTATAGGAAATTGGGTCGCAGATGAAGTGCTATACCAAGCAAGGATTCATCCACGACAGACAGCTTCTAGCTTGTCTAAAGAAAACTGCTCAACTTTGTATAAGTGCATTAAAGAGGTCATTGAAAAAGCAGTTGAAGTTGGAGCAGATAGTAGTCAGTATCCCACTAGTTGGATATTTCATTCACGTGAAAAGAAGGCCGGCAAGGCTTTTGTTGATGGGAAAAAAATTGACTTTATCACAGCTGGTGGCAGGACAACTGCTTACGTGCCAGAGTTGCAAAAGCTAAGTGGGTCACAAGACGTAAAAGAAGCTGGTAAGCCTAAAAGGCAAAGGTCAAAGAGAAAAAATGGTGGAGATGACGACATTGAGGAACCAACAGATGGGGAAAAGAAGAAGCTGGGAAGTCAGAAATCAAAGAAAGGGACAAATGCTGGAGGTAAAGGTAGGAAGCAGTCCAAAAAGAATGAATCTAAGGAAAGTGATGACAACAACGATGATGATACTGGTTCCAACGAAGATGATGATAATGATCAAGTTGAAAAGAAAAAACCAGACCGGGTGACTAATAGTAAACAAGCCAAGGGCGAGAAGCAATCGAAGAAAAGAGTTCAAACGAGTCAAAATAGTAAGAAAGCAAAAAGGAAAGCTAACTGTCGTTATGATCAGTTGATCGACTATGCTTCTGCAGATCACGACTGCTGTTTTGATTATGCTTTTGTTAACTACCTTATGTTAACCAGAAAAATTGAAGGTGGGATGCATTCAGTCTATGTAACTATCGTTATTATTAGTCCTACGTTCCTTCGCTTGAAAAAGGATACAAGGATTCAGAGTGAGGCACTTCACCACAAGAAACTACAAAGTATTACGCGACCACCTCAGTCGCTTGTCGGATTCCGCCTGAAATCTTGGGTTTGTTTTCAAGAATCAAGATTTTCGCTCTACAAAATTTGTGCGTGTCTCGTGAAAATTGACGAAGGAAGAAACGAAGGCACTAATTTTTGCTGGAGCAGCCACCTATTGTTTGCCGAAAGTTTCCACCTTCCTATGTGTCCGTCGTTTTTTGCTGGGCCGCACCTGCCCTGGCAATTGCATGCCCACCGCAAACCTCTCTCCACCTTGCCCTCAGCCTCTGAGCAGCCACTTCCGTGGAAATCTTCCTTTTACCTATTTTCCATACTTGAATTGCGGCAAATGGAAGATTCCTCCCTTTGCCACGAACAAGTGCCAGATGGTGAATGCTTTGAGGATCAGAAAGAAGATGGTGCATTAACTGAATCAAACTGTCAAAATGGTTTTTCTGAAGGAAGAAAGGAATTTGTTGCACCTGCTGTTGGAATGGAGTTCGAATCATATGATGATGCTTACAACTATTATATCTGCTATGCCAAGGAGGTGGGATTTCGGGTAAGGGTGAAAAATTCATGGTTCAAGCGAAATAGCAGAGAAAAGTATGGTGCAGTGCTTTGCTGTAGCAGCCAGGGTTTCAAAAGAGTAAAAGATGTTAACCATTTGAGAAAGGAAACAAGAACTGGTTGTCCAGCAATGATAAGGATGAGGTTAGTGGACTCTCAAAGATGGAGGGTACTTGAGGTTACACTTGAACACAATCACCTTTTAGGTGCTAAGATATACAGATCAATTAAGAAGATGGGAGTTGGAGCCAAAAGGAAGTCACTGCCTAGTTCTGATGCTGAAGTGCGAACAATAAAGTTGTACCGTGCACTTGTGATAGATGCAGGAGGTAATGGCAATGCAAATTCCAGTACTAGAGAATTCGGAACTTGTTTGGAGTTTTCTAGCCAGTTGAACCTTAAAAAAGGTGACGCACAAGCCATTTATAACTACCTTTGCCGTATGCAACTGACAAATCCAAACTTCTTTTACTTGATGGATTTCAATGATGAAGGGCATTTGAGGAATGTATTCTGGGCTGATGCCAGGTCTAGGGCTGCATGTGGTTATTTTAGTGATGTTATTTATATTGACAACACATATTTGTTGAACAAATATGAAATTCCTCTTGTGGCATTTGTTGGAATAAATCACCATGGTCAATCAGTGTTATTGGGTTGTGGCCTCCTTGGTGGTGAAACATTAGAGTCTTATATATGGTTGTTCAGAGCATGGGTTACATGTATGTCAGGATGCTCTCCCCAAACTATTATCACTGACAGGTGCAAGGCTTTGCAGAGTGCAATTGTAGAAGTTTTCCCTAGATCTCATCATTGTTTTGGTTTGTCACTAATTATGAAAAAAGTACCAGAGAAGTTGGGAGGGTTGCGCAATTATGATGTAATCAGGAAAACACTGACTAAAGCTGTTTATGAGACATTGAAAGTGATTGAATTTGAGGCAGCATGGGGATTTATGATTCAGCGATTTGGAATTTGTGATCATGAGTGGCTTCGTTCTCTATATGAAGACCGAGTTCGATGGGCACCAGTATACTTGAAGGACAGATTTTTTGCTGGAATGTCTGCAGCATGTCCTGGTGAGACCTTGAGTCCATTTTTTGATAAGTATGTGCACAAACAGACTCCTTTAAAGGAGTTTCTTGATAAGTATGAATTAGCTCTCCAAAAGAAGTACAAGGAAGAATCTGTTGCTGATATTGACTCAAGAAGCTGCAGTCCCTTGCTGAAAACAAGATGTTCTTTTGAATTGCAGCTCTCCAGAATGTACACAAGAGAAATATTCATGAAGTTCCAATTTGAAGTGGAAGAAATGTATTCTTGTTTTAGTACCACACAATTACATGTGGATGGCCCCATCATAATATTCTTGGTTAAGGAGCGTGTTTTAAGTGATGGAAATAGGAGGGAGATCAAGGATTTTGAAGTTCTGTACAACAGGACAGCTGGCGAAGTTCGATGCATCTGTAGCTGCTTTAACTTTAACGGATATTTATGTAGGCATGCACTGTGTGTGCTCAATTTTAATGGGGTGGAGGAGATACCTTCCAAATACATTCTTTCGCGGTGGAAAAAAGATTACAAGCGTCTACATGTTCCTGATCTTAGCTCTGGTATTGTTGATGAGACTGACCGTATTCAATGGTTTAATCAGTTATTTAGAAGTGCCTTGCAAGTTGTGGAGGAAGGGACGACTTCTCTAGACCATTACAATGTAGCGTTGCATGCTTTTCAAGAGTCGTTGAGTAGGATCCATGATGTAGAACAGAGACAGGAGTAA 3744 0.4156 MPELPEVEAARRAVEENCIGKKIKKSIIADDPKVIDGVSRSEFEVSLLGKTIVAARRKGKNMWLELDSPPFPTFQFGMAGAIYIKGVAVTKYKRSAVNDVDEWPSKYSKLFIELDDGLELSFTDKRRFARVRLLNNPTSVPPISELGPDALLEPMTLEEFTESLHKKKTEIKALLLDQSFVSGIGNWVADEVLYQARIHPRQTASSLSKENCSTLYKCIKEVIEKAVEVGADSSQYPTSWIFHSREKKAGKAFVDGKKIDFITAGGRTTAYVPELQKLSGSQDVKEAGKPKRQRSKRKNGGDDDIEEPTDGEKKKLGSQKSKKGTNAGGKGRKQSKKNESKESDDNNDDDTGSNEDDDNDQVEKKKPDRVTNSKQAKGEKQSKKRVQTSQNSKKAKRKANCRYDQLIDYASADHDCCFDYAFVNYLMLTRKIEGGMHSVYVTIVIISPTFLRLKKDTRIQSEALHHKKLQSITRPPQSLVGFRLKSWVCFQESRFSLYKICACLVKIDEGRNEGTNFCWSSHLLFAESFHLPMCPSFFAGPHLPWQLHAHRKPLSTLPSASEQPLPWKSSFYLFSILELRQMEDSSLCHEQVPDGECFEDQKEDGALTESNCQNGFSEGRKEFVAPAVGMEFESYDDAYNYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRVKDVNHLRKETRTGCPAMIRMRLVDSQRWRVLEVTLEHNHLLGAKIYRSIKKMGVGAKRKSLPSSDAEVRTIKLYRALVIDAGGNGNANSSTREFGTCLEFSSQLNLKKGDAQAIYNYLCRMQLTNPNFFYLMDFNDEGHLRNVFWADARSRAACGYFSDVIYIDNTYLLNKYEIPLVAFVGINHHGQSVLLGCGLLGGETLESYIWLFRAWVTCMSGCSPQTIITDRCKALQSAIVEVFPRSHHCFGLSLIMKKVPEKLGGLRNYDVIRKTLTKAVYETLKVIEFEAAWGFMIQRFGICDHEWLRSLYEDRVRWAPVYLKDRFFAGMSAACPGETLSPFFDKYVHKQTPLKEFLDKYELALQKKYKEESVADIDSRSCSPLLKTRCSFELQLSRMYTREIFMKFQFEVEEMYSCFSTTQLHVDGPIIIFLVKERVLSDGNRREIKDFEVLYNRTAGEVRCICSCFNFNGYLCRHALCVLNFNGVEEIPSKYILSRWKKDYKRLHVPDLSSGIVDETDRIQWFNQLFRSALQVVEEGTTSLDHYNVALHAFQESLSRIHDVEQRQE 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0139 1247 ProSiteProfiles Zinc finger SWIM-type profile. 1129 1165 IPR007527 GO:0008270
Glsi06g0139 1247 MobiDBLite consensus disorder prediction 358 386 - -
Glsi06g0139 1247 SUPERFAMILY N-terminal domain of MutM-like DNA repair proteins 2 151 IPR035937 -
Glsi06g0139 1247 ProSiteProfiles Formamidopyrimidine-DNA glycosylase catalytic domain profile. 2 129 IPR012319 GO:0003906|GO:0006284|GO:0008270|GO:0019104
Glsi06g0139 1247 MobiDBLite consensus disorder prediction 273 397 - -
Glsi06g0139 1247 NCBIfam DNA-formamidopyrimidine glycosylase 1 268 IPR020629 GO:0003906|GO:0006281|GO:0008270|GO:0008534
Glsi06g0139 1247 MobiDBLite consensus disorder prediction 284 319 - -
Glsi06g0139 1247 SMART H2TH_2 146 238 IPR015886 GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799
Glsi06g0139 1247 SUPERFAMILY S13-like H2TH domain 146 233 IPR010979 GO:0003676
Glsi06g0139 1247 Gene3D - 1 145 IPR035937 -
Glsi06g0139 1247 Pfam FAR1 DNA-binding domain 640 723 IPR004330 -
Glsi06g0139 1247 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 609 1241 IPR031052 GO:0006355
Glsi06g0139 1247 FunFam Formamidopyrimidine-DNA glycosylase 146 285 - -
Glsi06g0139 1247 CDD PF_Nei_N 1 134 - -
Glsi06g0139 1247 SMART 26again6 1140 1167 IPR006564 GO:0008270
Glsi06g0139 1247 SMART Fapy_DNA_glyco_2 2 132 IPR012319 GO:0003906|GO:0006284|GO:0008270|GO:0019104
Glsi06g0139 1247 Pfam SWIM zinc finger 1139 1161 IPR007527 GO:0008270
Glsi06g0139 1247 Gene3D - 146 287 - -
Glsi06g0139 1247 FunFam Putative Formamidopyrimidine-DNA glycosylase 1 145 - -
Glsi06g0139 1247 Pfam Formamidopyrimidine-DNA glycosylase H2TH domain 146 235 IPR015886 GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799
Glsi06g0139 1247 Pfam Formamidopyrimidine-DNA glycosylase N-terminal domain 1 131 IPR012319 GO:0003906|GO:0006284|GO:0008270|GO:0019104
Glsi06g0139 1247 Pfam MULE transposase domain 842 936 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0139 Glsi-ChrGlsi06 992539 1003239 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Glsi06g0139 Fapy_DNA_glyco 1e-27 No_clan