Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0129 ATGGTGACGGCGACAACCAACTGTGAGACTCTCGTAGCCGTGTCTCTGCCTTTTCTTGCTCTTCTGTACAAAGGAATCGATTACAGACTTTACAGTTACTTCGATTTGGAAGTCAATTTCGTAGCTGAAATGGAAGAGGAAGATGATTGTGTGGAATATATCCCCGTGGCCAAGCGCAGGGCCATGGAAGCTCAGAAGATTCTTCAGCGAAAAGGGAAGTCGTCTTCCGCAGTTGATGATGATTTGGAGAAATCTAGAGTGGCTGAAACTAAACCGAGTCTTCTGGTTATGGCGTCGCAATTGAAACGGGAACAACCTGATATTAGTCCGACAGAGCAGATTGTTCAACAGGAAAAGGAGATGATTGAGAACTTGTCGGATAGAAAAACCCTTATGTCTGTTCGAGAGCTGGCTAAGGGAATCACTTATAAGGAGCCTTTGCGTACAGGATGGAAGCCGCCTTTACACGTTAGAAGAATGTCCAAAAAGGAATGTGATTTGATTTGGAAGCAGTGGCATATTATAGTTGATGGTGACGACATCCCACCCCCAGTTAAGAATTTCAAGGATATGAGATTTCCGGAGCCAATCTTGAAGAAGTTGAAAGCTAAGGGGATTGTGCAACCGACACCCATTCAGGTGCAAGGTCTTCCTGTTATCTTATCTGGGCGGGATATGATTGGGATTGCATTCACAGGGTCAGGGAAAACTCTGGTCTTTGTGTTGCCGATGATCATGCTGGCATTGCAGGAGGAGATTATGATGCCTATTGTTCCAGGAGAAGGTCCATTTGGTTTGATTATTTGCCCGTCAAGGGAGCTGGCTAGGCAGACTTATGAAGTGGTTGAACAGTTCTTGATACCTTCGAGAGAAGCTGGATATCCAGAGCTCAGGGCTTTGCTTTGTATTGGTGGAGTGGATATGAGATCACAACTAGATGTTGTGAAGAAGGGTGTTCATATTGTTGTTGCCACCCCTGGGAGATTAAAAGATATGTTGGCAAAGAAAAAAATGAATCTTGATAATTGCAGGTATTTAACATTAGATGAGGCTGATAGATTGGTAGATTTGGGATTTGAAGATGACATAAGAGAAGTGTTTGACCACTTCAAAGCTCAAAGACAAACTCTCTTATTTTCTGCCACTATGCCAACCAAAATTCAGAATTTTGCCAGAAGTGCTCTGGTGAAACCTGTTCTTGTCAATGTGGGCCGAGCAGGGGCAGCAAATCTTGATGTAATCCAGGAGGTAGAGTATGTTAAGCAAGAGGCAAAAATAGTTTATCTCCTTGAGTGCCTGCAAAAAACCCCACCTCCAGTTTTAATTTTCTGTGAGAATAAGGCAGATGTGGATGACATTCATGAATATCTTCTCTTGAAAGGAGTGGAAGCAGTGGCTATTCATGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCCATCTCAGCTTTTAAGTCTGGAAAGAAAGATGTGTTGGTTGCAACTGATGTTGCATCCAAGGGTTTGGATTTTCCTGATATTCAGCATGTTATTAACTATGATATGCCAGCTGAAATTGAAAATTATGTTCATAGGATTGGACGTACAGGAAGATGTGGCAAGACAGGTATAGCAACAACATTTATCAACAAGAATCAAAGTGAGACAACATTACTTGATTTGAAACACCTCTTGCAAGAAGCAAAACAGCGTATTCCCCCAGTTTTAGCAGAGCTGAATGATCCAATGGAAGATTATGAAGAAATTACAGACAAAAGTGGGGTCAAGGGTTGTGCATATTGTGGTGGGCTTGGTCATCGCATCCGTGATTGTCCCAAACTAGAACATCAGAAGAGCATGGCTATTGCAAATAATAGAAGGGATTATTTTGGATCTGGTGGTTACAGAGGGGAAATTTAA 1896 0.4251 MVTATTNCETLVAVSLPFLALLYKGIDYRLYSYFDLEVNFVAEMEEEDDCVEYIPVAKRRAMEAQKILQRKGKSSSAVDDDLEKSRVAETKPSLLVMASQLKREQPDISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYKEPLRTGWKPPLHVRRMSKKECDLIWKQWHIIVDGDDIPPPVKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMLALQEEIMMPIVPGEGPFGLIICPSRELARQTYEVVEQFLIPSREAGYPELRALLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVLVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISAFKSGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDYEEITDKSGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRRDYFGSGGYRGEI 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0129 631 SMART helicmild6 451 532 IPR001650 -
Glsi06g0129 631 SMART c2hcfinal6 589 605 IPR001878 GO:0003676|GO:0008270
Glsi06g0129 631 CDD SF2_C_DEAD 413 541 - -
Glsi06g0129 631 Gene3D - 150 405 IPR027417 -
Glsi06g0129 631 SMART ultradead3 205 416 IPR014001 -
Glsi06g0129 631 Gene3D - 411 573 IPR027417 -
Glsi06g0129 631 CDD DEADc_DDX41 197 402 IPR044113 GO:0000398|GO:0003724|GO:0005524
Glsi06g0129 631 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 136 572 - -
Glsi06g0129 631 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 412 572 IPR001650 -
Glsi06g0129 631 ProSiteProfiles Zinc finger CCHC-type profile. 590 605 IPR001878 GO:0003676|GO:0008270
Glsi06g0129 631 SUPERFAMILY Retrovirus zinc finger-like domains 589 610 IPR036875 GO:0003676|GO:0008270
Glsi06g0129 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 262 547 IPR027417 -
Glsi06g0129 631 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 186 214 IPR014014 GO:0003724
Glsi06g0129 631 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 217 401 IPR014001 -
Glsi06g0129 631 FunFam Probable ATP-dependent RNA helicase DDX41 153 402 - -
Glsi06g0129 631 Coils Coil 543 563 - -
Glsi06g0129 631 Pfam Helicase conserved C-terminal domain 425 532 IPR001650 -
Glsi06g0129 631 FunFam Probable ATP-dependent RNA helicase DDX41 411 573 - -
Glsi06g0129 631 Pfam Zinc knuckle 589 605 IPR001878 GO:0003676|GO:0008270
Glsi06g0129 631 Pfam DEAD/DEAH box helicase 210 389 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0129 Glsi-ChrGlsi06 935737 937844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0129 158 567 Eukaryotic Initiation Factors Gene Family AT3G13920 29.540 8.80e-57 196