Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0116 ATGCAGCCACCTCTCGAAGGTATCGCTGCTGTGGTCGGACAACACGTACTCTTCGGACCCAAACACGGCCACGCCGACCATTACAACTCCAAAGGTCTCGTGTCGGTGTCGGAGTCCGACACGCCGACAAAACCAGGCAAGACTAAGGGGGCCAATCTTTCTGTAAACAAGAGCTACAGAGGAGTGAGGAAGAGGCCGTGGGGGAGGTGGTCCGCGGAGATACGTGACCGAATCGGTCGGTGCCGGCACTGGTTGGGGACATTCGACACGGCGGAGGAGGCGGCCCGCGCGTACGATGCGGCGGCAAGGCGACTGAGAGGCTCCAAGGCTCGGACCAACTTTGAGATACCTTCGGTGTTGCCACTGTCGTCGCCTTGTTCGTCTTCTTCGTCCACGGAACTGAAAAAGGTGAGTGGTGGTAACAGTCATAATAAGACGAAGGCTGTGAAGAATGGTAGCAAGTGTTGTGTGGTTAACTCTGTGGCTCAATTGTTCAGTGTGATGCCTGAAGTTGAGAGCCACAGGAATGGCGGGGGTGAGAAAACAAGTAGTGTGTTTGGGAACGTGGTGCTAGACTTGAAGCTGGCTAGAAGCCCTAGAATGGTGATATATTGTGAATTTGGCAGTTTGGCAGAGCAAAATAAGCTTTGTTGCAAGTCAGAAATACGAAAACCAATCATGATCCAGGTTAAGTACAAGGTACAACCAGATGCTGGTGGAAGAAAATTTGTGAGTTTGACAGAGTTAATTTGTGGAGAACCCGTAAAGCTTCAGTAA 777 0.5161 MQPPLEGIAAVVGQHVLFGPKHGHADHYNSKGLVSVSESDTPTKPGKTKGANLSVNKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLPLSSPCSSSSSTELKKVSGGNSHNKTKAVKNGSKCCVVNSVAQLFSVMPEVESHRNGGGEKTSSVFGNVVLDLKLARSPRMVIYCEFGSLAEQNKLCCKSEIRKPIMIQVKYKVQPDAGGRKFVSLTELICGEPVKLQ 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0116 258 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 44 170 - -
Glsi06g0116 258 Gene3D AP2/ERF domain 57 116 IPR036955 GO:0003700|GO:0006355
Glsi06g0116 258 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Glsi06g0116 258 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Glsi06g0116 258 Pfam AP2 domain 58 107 IPR001471 GO:0003700|GO:0006355
Glsi06g0116 258 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Glsi06g0116 258 FunFam Ethylene-responsive transcription factor 2 57 116 - -
Glsi06g0116 258 SUPERFAMILY DNA-binding domain 58 115 IPR016177 GO:0003677
Glsi06g0116 258 MobiDBLite consensus disorder prediction 34 53 - -
Glsi06g0116 258 CDD AP2 57 116 IPR001471 GO:0003700|GO:0006355
Glsi06g0116 258 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0116 Glsi-ChrGlsi06 828176 829733 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0116 6 121 AP2-EREBP Transcription Factor Family AT1G80580 63.793 2.78e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi06g0116 AP2 2e-15 CL0081