Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0113 ATGAGAAGATGGCATTGGAGAAATAGAGGAAAGGAGGTGACGGTAACAGAAGCAAATGGGATTGACCGAGGCGAAAGGAAAGAGCAGAAGGCCGGGTCATTGGGCCTCGATGACATCAGGAGGGAGAACGTTGATCTCGAGCGGATACCAGTAGATGAAGTGTTTCGAGAGTTGAAATGTTCTAAGGAGGGTCTGGCCAATGAGGAAGGGCAAAAGAGATTGGAAGTTTTTGGCCCCAACAAATTGGAAGAGAAGAAGGAAAATAAGTTGCTGAAATTCCTGGGCTTTATGTGGAATCCTTTATCATGGGTGATGGAAGCGGCTGCTATCATGGCCATTGCATTGGCAAATGGAGGGGGCAAACCACCAGACTGGCAGGATTTTGTGGGAATAGTGACATTGCTTGTTATCAACTCCACCATTAGCTTTATAGAAGAAAACAATGCAGGCAATGCTGCTGCAGCACTTATGGCGGGACTTGCTCCAAAAACCAAGGTTCTTAGAGATGGAAGGTGGACCGAACAGGACGCTGCTATACTGGTACCGGGAGATATAATCAGCATCAAGTTAGGAGATATCGTCCCAGCAGATGCTCGTCTCTTGGAAGGAGATCCACTCAAGATCGATCAGTCTGCACTTACTGGTGAGTCATTGCCTGTTACGAAGAATGCAGGTGATGAAGTCTTCTCTGGGTCCACTGTGAAGCAAGGAGAGATTGAGGCTGTCGTAATCGCTACTGGGGTACACACTTTCTTTGGTAAGGCTGCTCATCTGGTAGACAGCACCAACCAAGAAGGGCACTTCCAAAAGGTATTGACAGCCATTGGTAACTTCTGCATTTGCTCCATTGCTGTGGGGATGATTATAGAGATTGTTGTGATGTACCCAATTCAGCACCGCAAGTATAGGGATGGAATTGACAATCTCTTGGTGCTTCTCATTGGAGGGATTCCAATTGCCATGCCGACGGTCTTGTCAGTAACAATGGCTATTGGTTCCCATAGGCTGTCCGAGCAAGGCGCCATCACCAAGAGGATGACTGCCATCGAGGAGATGGCTGGGATGGATGTTTTATGTAGTGACAAGACTGGCACTCTAACGCTGAACAAGCTCACTGTAGACAAGAATTTGATTGAGGTTTTTGAAAGAGATGTTGACAAGGACCATGTAATTTTGCTTGGAGCTAGGGCCTCTAGGGTGGAGAATCAAGATGCCATTGATGCTTGCATTGTTGGAATGTTGGGTGACCCAAAGGAGGCCAGAGATGGGATCACAGAGGTGCATTTCCTTCCCTTTAATCCAGTGGACAAGCGTACAGCGATAACATACGTAGACTCTTTAGGCAATTGGCACCGAGTAAGCAAAGGGGCGCCAGAGCAGATTATAGCACTTTGCAATCTCCGGGGTGATGTATTGAAGAAAGCTCATACCATTATCGATAAGTTTGCTGATCGCGGCCTTCGTTCCCTTGCTGTTGGCAGACAAGAAGTGCCAGAGAAGATCAAGGAGAGTGCTGGAGGGCCATGGCATTTTGTGGGTCTCTTGCCTCTCTTCGATCCTCCTAGGCATGACAGTGCAGAGACCATCCGACAAGCTCTCCATCTTGGAGTGAACGTTAAGATGATTACCGGTGATCAGCTTGCTATTGGGAAGGAGACTGGTCGCAGGCTTGGCATGGGTAGTAACATGTACCCTTCTTCCTCTCTGCTTGGCGAGCACAAGGATGAGTCTATTGCCGCGCTTCCCATTGATGAACTTATTGAGAAGGCTGATGGCTTTGCTGGCGTCTTTCCTGAGCACAAATACGAGATAGTGAAGAGACTCCAAGACAGGAAACACATATGTGGGATGACTGGAGATGGTGTGAACGATGCTCCTGCCTTGAAAAGGGCAGATATTGGAATTGCAGTGGCTGATGCAACTGATGCAGCACGAAGTGCATCTGACATAGTCCTGACGGAGCCAGGTTTGAGTGTGATTGTGAGTGCAGTGTTGACAAGCAGAGCCATTTTCCAGAGAATGAAGAACTACACCATTTATGCCGTCTCCATAACAATCCGGATCGTGCTGGGCTTTATGCTGATTGCTCTTATCTGGAAATATGATTTCTCACCTTTTATGGTTTTGATCATTGCCATACTTAATGATGGGACAATTATGACCATTTCCAAAGATAGGGTGAAGCCGTCTCCCAGTCCAGATTCGTGGAAGCTTAATGAGATTTTTGCCACTGGCGTAGTGCTTGGTACCTATCTGGCTGTTATGACTGTTGTCTTCTTCTGGGCTGCTTATGCATCTGATTTCTTTTCGGAAAAATTTGGCGTGAGATCCATTAGGAATAACAAGGATGAGCTAACAGCAGCTGTTTACCTTCAAGTGAGTATAGTAAGTCAGGCTCTCATCTTCGTTACGCGGTCAAGGAGCTGGTCTTACATCGAACGCCCTGGTCTCTTGCTTGTTTTCGCCTTTTTTGTAGCTCAGCTGATTGCCACCTTGATCGCGGTGTATGCACACTGGGGCTTTGCAAGGATACAAGGAATTGGGTGGGGCTGGGCAGGTGTCATTTGGCTTTACAGCATCGTTTTCTACATTCCATTGGATATACTCAAATTCATTATCCGATATGCATTGAGTGGCAAGGCGTGGAATAATATTACTGAGAACAAGACTGCTTTCACAACAAAGAAAGATTACGGAAGGGGAGAGCGAGAGGCACAATGGGCTACAGCTCAACGCACACTACATGGGCTGAATCCACCCGAAACAGAAAACATCTTGAGTGACAAGAACAACTACAGGGAATTGTCCGAAATCGCAGAACAGGCCAGGAAACGTGCTGAAGTTGCAAGGTTGAGAGAGCTTCACACACTCAAGGGGCATGTCGAGTCCGTTGTGAAACTAAAGGGGCTTGACATTGAGACCATTCAGCAGCATTACACCGTTTGA 2946 0.4715 MRRWHWRNRGKEVTVTEANGIDRGERKEQKAGSLGLDDIRRENVDLERIPVDEVFRELKCSKEGLANEEGQKRLEVFGPNKLEEKKENKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIVTLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWTEQDAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNAGDEVFSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNQEGHFQKVLTAIGNFCICSIAVGMIIEIVVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFERDVDKDHVILLGARASRVENQDAIDACIVGMLGDPKEARDGITEVHFLPFNPVDKRTAITYVDSLGNWHRVSKGAPEQIIALCNLRGDVLKKAHTIIDKFADRGLRSLAVGRQEVPEKIKESAGGPWHFVGLLPLFDPPRHDSAETIRQALHLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGEHKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLIALIWKYDFSPFMVLIIAILNDGTIMTISKDRVKPSPSPDSWKLNEIFATGVVLGTYLAVMTVVFFWAAYASDFFSEKFGVRSIRNNKDELTAAVYLQVSIVSQALIFVTRSRSWSYIERPGLLLVFAFFVAQLIATLIAVYAHWGFARIQGIGWGWAGVIWLYSIVFYIPLDILKFIIRYALSGKAWNNITENKTAFTTKKDYGRGEREAQWATAQRTLHGLNPPETENILSDKNNYRELSEIAEQARKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0113 981 Pfam E1-E2 ATPase 161 338 - -
Glsi06g0113 981 SFLD p-type atpase 341 670 IPR044492 -
Glsi06g0113 981 ProSitePatterns E1-E2 ATPases phosphorylation site. 361 367 IPR018303 -
Glsi06g0113 981 PRINTS H+-transporting ATPase (proton pump) signature 649 674 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi06g0113 981 PRINTS H+-transporting ATPase (proton pump) signature 475 493 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi06g0113 981 PRINTS H+-transporting ATPase (proton pump) signature 618 634 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi06g0113 981 PRINTS H+-transporting ATPase (proton pump) signature 790 811 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi06g0113 981 PRINTS H+-transporting ATPase (proton pump) signature 590 606 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi06g0113 981 FunFam Plasma membrane ATPase 512 666 - -
Glsi06g0113 981 SUPERFAMILY HAD-like 355 665 IPR036412 -
Glsi06g0113 981 FunFam ATPase 4 plasma membrane-type 603 845 - -
Glsi06g0113 981 Coils Coil 932 952 - -
Glsi06g0113 981 Pfam haloacid dehalogenase-like hydrolase 355 632 - -
Glsi06g0113 981 SUPERFAMILY Calcium ATPase, transduction domain A 162 259 IPR008250 -
Glsi06g0113 981 Gene3D - 162 246 - -
Glsi06g0113 981 NCBIfam HAD-IC family P-type ATPase 131 380 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi06g0113 981 NCBIfam HAD-IC family P-type ATPase 593 705 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi06g0113 981 Gene3D - 930 981 - -
Glsi06g0113 981 FunFam Plasma membrane ATPase 162 246 - -
Glsi06g0113 981 SUPERFAMILY Calcium ATPase, transmembrane domain M 44 877 IPR023298 -
Glsi06g0113 981 PRINTS P-type cation-transporting ATPase superfamily signature 535 545 - -
Glsi06g0113 981 PRINTS P-type cation-transporting ATPase superfamily signature 209 223 - -
Glsi06g0113 981 PRINTS P-type cation-transporting ATPase superfamily signature 359 373 - -
Glsi06g0113 981 PRINTS P-type cation-transporting ATPase superfamily signature 618 637 - -
Glsi06g0113 981 PRINTS P-type cation-transporting ATPase superfamily signature 641 653 - -
Glsi06g0113 981 PRINTS P-type cation-transporting ATPase superfamily signature 513 524 - -
Glsi06g0113 981 FunFam Plasma membrane ATPase 371 518 - -
Glsi06g0113 981 SMART Cation_ATPase_N_a_2 45 117 IPR004014 -
Glsi06g0113 981 Pfam Cation transporter/ATPase, N-terminus 49 111 IPR004014 -
Glsi06g0113 981 Gene3D - 124 845 - -
Glsi06g0113 981 NCBIfam plasma-membrane proton-efflux P-type ATPase 64 836 IPR006534 GO:0008553|GO:0016020|GO:0120029
Glsi06g0113 981 Gene3D - 356 655 IPR023214 -
Glsi06g0113 981 Gene3D - 371 518 IPR023299 GO:0000166
Glsi06g0113 981 PANTHER CALCIUM-TRANSPORTING ATPASE 47 913 - -
Glsi06g0113 981 CDD P-type_ATPase_H 64 871 IPR006534 GO:0008553|GO:0016020|GO:0120029
Glsi06g0113 981 SFLD C1.7: P-type atpase like 341 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0113 Glsi-ChrGlsi06 812241 817321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0113 31 981 Primary Pumps ATPases AT2G07560 84.437 0.0 1637