LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi06g0112	ATGGCTAGGCCCCAACAACGCTATCGAGGTGTCCGCCAAAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTTTTGAAGACTAGAATATGGCTAGGCACCTTTGAAACGGCAGAAGATGCAGCAAGAGCGTACGATGAGGCAGCAAGGCTTATGTGTGGGACAAAAGCACGCACCAATTTCCCGTACAATCCCAATGAGCCACAATCATCTTCCTCCAAGTTTCTGTCTGCAACTTTGACGGCCAAGCTCCACAAATGTCATATGGCCTCCCTTTCGCTTCAAATGGCGAAGCAGAAACCACCACAACAGGAGCAGCAAGAAGCACAGAGGCCTAACCCATTTGCCTCCGGCAATGCCATTGCCGGAACAAGTGCAGAGACGAGCTTTAGGTGGCCGGAGAAGAGACACGAGGAATTACAATGGCTTGAAGGGAACTGGGCTGGCGAGGAAGGCCAAGCTGAAGTTTCCCAGCAACAATTTCAGCCAGTTCTTGAAGATGATCACATAGAGCAGATGATTCAGGAGTTGCTTCATTATGGGTCAATTGAGCTTTGCTCTGTTGGCTCAGCTTAGGTGGGAATGAATCATGCAAGAGTCCACTCAAAGCCTTCATCTTTAAGTGAGCTCTTACTCTTTCCGGAACCAAACAATTTTGTGTTAGTTGAGGTCATTGGAAACTTCAAAGAGAGAGAGACATGGAGTCACAGGCACACATGGGATGTCATGCACATTTCCCTTTCAGTTCTCTCTCTCTGCTTCTCCATTCCTTCACATGGGAAACCATGTTATCCAAATGTAGGAAACCCTCAAGATTCACATGGGTTCCGGGCTTATTAG	846	0.4846	MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGTKARTNFPYNPNEPQSSSSKFLSATLTAKLHKCHMASLSLQMAKQKPPQQEQQEAQRPNPFASGNAIAGTSAETSFRWPEKRHEELQWLEGNWAGEEGQAEVSQQQFQPVLEDDHIEQMIQELLHYGSIELCSVGSAXVGMNHARVHSKPSSLSELLLFPEPNNFVLVEVIGNFKERETWSHRHTWDVMHISLSVLSLCFSIPSHGKPCYPNVGNPQDSHGFRAY	281

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi06g0112	281	Pfam	AP2 domain	7	56	IPR001471	GO:0003700\|GO:0006355
	Glsi06g0112	281	ProSiteProfiles	AP2/ERF domain profile.	7	64	IPR001471	GO:0003700\|GO:0006355
	Glsi06g0112	281	SUPERFAMILY	DNA-binding domain	7	66	IPR016177	GO:0003677
	Glsi06g0112	281	CDD	AP2	6	66	IPR001471	GO:0003700\|GO:0006355
	Glsi06g0112	281	PRINTS	Ethylene responsive element binding protein signature	8	19	IPR001471	GO:0003700\|GO:0006355
	Glsi06g0112	281	PRINTS	Ethylene responsive element binding protein signature	30	46	IPR001471	GO:0003700\|GO:0006355
	Glsi06g0112	281	Gene3D	AP2/ERF domain	6	65	IPR036955	GO:0003700\|GO:0006355
	Glsi06g0112	281	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	6	149	-	-
	Glsi06g0112	281	FunFam	Ethylene-responsive transcription factor 2	6	65	-	-
	Glsi06g0112	281	SMART	rav1_2	7	70	IPR001471	GO:0003700\|GO:0006355
	Glsi06g0112	281	MobiDBLite	consensus disorder prediction	98	128	-	-
	Glsi06g0112	281	MobiDBLite	consensus disorder prediction	94	129	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi06g0112	Glsi-ChrGlsi06	806844	809959	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi06g0112	1	190	AP2-EREBP Transcription Factor Family	AT5G25190	64.211	1.16e-75	227

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Glsi06g0112		AP2	2.1e-11	CL0081