Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0108 ATGCAAGCTTGGGTGTCATCTGATGGGTCAGAAATGGTTTCTCACGCCCTGACTAGACACAAAGAGATTCTTCAAGATCTCACCCAGGATTTTAAAGAGTTTGATCGGACAAGATTAGAGTTGGAAGAGGGCGTAGGTTCTGCAGAGCAATCCCTCCAGAAAAACCATGCATCTATTAGCCAAAGTACGGGACAGATGGACAGTGTTATTTCACAAGCACAAGCAACACTCGGTGCACTTGTCCTTAAACGTTCAACTTTTGGTGGCATCAATTCAAAGCACAGCAATGTTAGCAGTCGCCTTCCAACATTAAATAACATGCTGTCAGCAATAAAGCGAAAAAAAGTCCTGGGATGCCATCATACTTTCCCTTGTAGCATCCTTCTTGCTTCTCATAAGAAGTTGATACAAGATAGAACAAACGTCAGATTGGCTGATGAGTGTGGAGATAAGTGGTCATGCTTGAGTTGCAACTTGCACTTGATTACCTTGGACCTTTTCATGTTGGTGGGATGGGTTGATAACTTGAAAAGCAAGTGCACTCATATCCCCTTGGCATCTTTATCTGCAACCATCAATGACTATTTTGGTGTTCCATTAAGCTGTGTCAACAACAATGATGTTTATCTGAAGGGAATGAACCATGCAAATAGCCTCAACATGAATCATAGTTCTCAAGCACAGGACAGCTCAATGGTAGCATTTGCAATTATTCACATAAGCTCTCCCATCTACTTGTCGGCCACAGAATGTTTTGATGGCTCCAAAGGTGTACCATTTCTTCTTTTCTTTCAGTTTTCCAGCAAAGGCTTGCCAGTTCATTCGGCCACATATTGTGTGGGGCAGAAGAAGCATATTGAGGATAAAATAAAGAATATGAATGACAGGTGGAGCCCTCGGAGGAGACCTCTGAATGAAAATTGTTCATTTCATGCCTTTCAAATTTCATCTTTCTTGCTGTTAAACCAAACTTCATCGCCCATAAGAAGGCAATCCTTGCATATTTCTTCCTATATGGACCTTCAAAGGTCAGAGCTATGTCCGTCTGAAAATTTGAACATCATCTCATTTTCAGATACTCCACCATGCCCAGAACCCTCAATGGATAGTCAAACAGAAAACAGACAGACAGAAAAAGAAGAACAAAAAGACCGACATCACTCAGCTCCTAATCTTCTACTAGATCTAACTCTCTCTAGTAAGGATTCAGCTGATGGATCAAAGCCAGAACTCAATCTCATCAATTATTTCGAGACGAAGTCATCCTTGAACTCCTCAGAATCTTCTCAAGGTAATGAACTGGAGCCCCGGATTTTCTCATGTAACTACTGCCAAAGAAAATTTTATAGTTCGCAGGCACTTGGAGGACACCAGAATGCACATAAGCGAGAAAGAACTTTGGCAAAAAGAGGACATAAAGTTGGAGCTGCAGTTTCAGTAGACTTTGGACAGAGGTACTCTAGTATGGCTTCCCTGCCTTTGCATGGCTCGTATAGCAGATCACTTGGGATTCAGGCGCATTCTATGATTAACAAGCCCTCTTATCAAGCACCCATTATTGGTTTATCTCGCTCCCATGGTCAAAATGTGTGGTGGAGGCAGCCTATGGATTCACAACCCGCAATTGGGAAGCTTCCATCTGGGAAAAATCATGTTGGGGACGGAATTGAACCTTCCTTTGCTGGTGGCATTCCGAGGGTAGAGAAGTTTTCTCCGAAGATGGTGACGGATGGAATTGGAAGTTACTGGTTGGGAAGTGTTTCCCATCTAACAACTAAACAAGAGGAGTTGCAGAAGCTTGACTTGTCACTCAAACTATAA 1821 0.425 MQAWVSSDGSEMVSHALTRHKEILQDLTQDFKEFDRTRLELEEGVGSAEQSLQKNHASISQSTGQMDSVISQAQATLGALVLKRSTFGGINSKHSNVSSRLPTLNNMLSAIKRKKVLGCHHTFPCSILLASHKKLIQDRTNVRLADECGDKWSCLSCNLHLITLDLFMLVGWVDNLKSKCTHIPLASLSATINDYFGVPLSCVNNNDVYLKGMNHANSLNMNHSSQAQDSSMVAFAIIHISSPIYLSATECFDGSKGVPFLLFFQFSSKGLPVHSATYCVGQKKHIEDKIKNMNDRWSPRRRPLNENCSFHAFQISSFLLLNQTSSPIRRQSLHISSYMDLQRSELCPSENLNIISFSDTPPCPEPSMDSQTENRQTEKEEQKDRHHSAPNLLLDLTLSSKDSADGSKPELNLINYFETKSSLNSSESSQGNELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHKVGAAVSVDFGQRYSSMASLPLHGSYSRSLGIQAHSMINKPSYQAPIIGLSRSHGQNVWWRQPMDSQPAIGKLPSGKNHVGDGIEPSFAGGIPRVEKFSPKMVTDGIGSYWLGSVSHLTTKQEELQKLDLSLKL 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0108 606 ProSitePatterns Zinc finger C2H2 type domain signature. 441 461 IPR013087 -
Glsi06g0108 606 SUPERFAMILY beta-beta-alpha zinc fingers 436 466 IPR036236 -
Glsi06g0108 606 Gene3D Classic Zinc Finger 418 485 - -
Glsi06g0108 606 MobiDBLite consensus disorder prediction 372 390 - -
Glsi06g0108 606 Pfam Snare region anchored in the vesicle membrane C-terminus 51 115 - -
Glsi06g0108 606 ProSiteProfiles Zinc finger C2H2 type domain profile. 439 466 IPR013087 -
Glsi06g0108 606 FunFam Zinc finger protein 2 417 485 - -
Glsi06g0108 606 MobiDBLite consensus disorder prediction 358 390 - -
Glsi06g0108 606 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 339 606 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0108 Glsi-ChrGlsi06 771281 780302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0108 355 606 C2H2 Transcription Factor Family AT5G10970 42.481 4.98e-42 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi06g0108 V-SNARE_C 7e-12 CL0147