Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0102 ATGGGTTCCTCATTGTTTAGAAACCGTTTCCTGTGCAGTGAAGAAGGTGTTGTTGCAGCTGAGACAGCTGCTTCAATTCCAGGTGAGCCAATGGACATCTTGACTGCCTTGCAGCTTGTGCTGAGAAAATCACTGGCTTATGGTGGTCTTGGCCGAGGTCTTCATGAAGGTGCGAAGATGATTGAGAAACATGCTGCACATCTCTGCGTTCTAGCAGAAGACTGTGACCAACCTGACTACGTTAAACTGATCAAAGCCCTTTGTGCTGAGCACAATGTTAGCCTTTTGACAGTTCCCAGTGCAAAGACCCTCGGAGAGTGGGCTGGTTTGTGCAAGATCGATTCAGAAGGAAAGGCTAGAAAGGTAGTTGGTTGCTCCTGCGTAGTTGTCAAGGATTTCGGGGAGGAACATGAAGCCTATAATGTAGTTTTGCAGCATGTGAAATCTCACTGA 453 0.4724 MGSSLFRNRFLCSEEGVVAAETAASIPGEPMDILTALQLVLRKSLAYGGLGRGLHEGAKMIEKHAAHLCVLAEDCDQPDYVKLIKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEEHEAYNVVLQHVKSH 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0102 150 FunFam 40S ribosomal protein S12 17 150 - -
Glsi06g0102 150 SUPERFAMILY L30e-like 30 148 IPR029064 -
Glsi06g0102 150 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 36 129 IPR004038 -
Glsi06g0102 150 PRINTS Ribosomal protein S12E family signature 40 53 IPR000530 GO:0003735|GO:0005840|GO:0006412
Glsi06g0102 150 PRINTS Ribosomal protein S12E family signature 54 70 IPR000530 GO:0003735|GO:0005840|GO:0006412
Glsi06g0102 150 PRINTS Ribosomal protein S12E family signature 95 116 IPR000530 GO:0003735|GO:0005840|GO:0006412
Glsi06g0102 150 PRINTS Ribosomal protein S12E family signature 120 133 IPR000530 GO:0003735|GO:0005840|GO:0006412
Glsi06g0102 150 PANTHER 40S RIBOSOMAL PROTEIN S12 26 150 - -
Glsi06g0102 150 Gene3D - 17 150 IPR029064 -
Glsi06g0102 150 ProSitePatterns Ribosomal protein S12e signature. 36 54 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0102 Glsi-ChrGlsi06 746810 747789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0102 26 150 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 73.600 3.87e-65 193