Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0099 ATGGCTTCCACAGTTTCAACATCTAGGCAGCCGCAATTCATTGCGAGCACTGGCAACCGGAGCTCCTCTAATGCACCGCTGATCGACAACTCGGATACTGATCAAATTGTTGTACCCGATAAGACTAGCTGGAAAAACTTTTTTGCATATATGGGTCCTGGTTTTCTTGTTTCTATTGCATATATAGACCCCGGAAACTTTGAAACGGATCTTCAGTCAGGGGCACAATATAAATATGAGTTACTTTGGATCATATTGGTAGCCTCTTGTGCTGCTCTTATAATTCAATCAATGGCAGCCAATCTGGGAGTTGTCACTGGAAAGCATTTAGCAGAGCATTGTAGAGCTGAATATCCTCGAGCGACAAATTTCATCTTATGGGTCCTTGCTGAAGTTGCCATAGTGGCCTGTGACATTCCTGAAGTAATTGGAACAGCCTTTGCGTTGAACATGCTCTTCAACATACCGGTTTGGATCGGTGTTCTTCTGACAGGGTTCAGTACATTGATCCTCTTGGCATTACAGCAATATGGGGTTAGGAAACTTGAATTCTTGATTGCATTTATGGTATTTACAATTGCTGCGTGCTTTTTTGCTGAGATGGGGTATGCTAAGCCCGATGCTAAAGAAGTTCTCGAGGGTCTTTTTGTGCCAAAACTCAAAGGGAGTGGTGCTACTGGTCTTGCAATTTCACTCCTTGGGGCTATGGTTATGCCACACAATCTCTTCCTCCATTCAGCATTGGTGCTTTCTAGAAAAATACCGCGATCAGTTCATGGAATCAAAGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTTATGGTAGCCTTCCTAATAAATGTTTCTGTTATTTCCGTAAGCGGTGCAGTTTGCAATTCTTCAAATTTGATAGCAGAAGATCAGAAGAACTGTCAAGATTTAGACTTGAACAAAGCTTCCTTTCTACTAAGAAATGTCTTGGGTGCATGGAGTTCAAAACTCTTTGCAGTTGCTTTGCTGGCATCCGGTCAAAGTTCTACTATAACAGGAACATATGCAGGGCAGTATGTCATGCAGGGATTTCTTGATTTACGACTGACGCCATGGATTCGAAATCTTTTAACTCGTTGCTTAGCCATAGTTCCTAGTTTGATTGTTGCAGTCATTGGTGGCTCTGCTGGGGCTGGGAAGCTCATAATTATTGCATCAATGATCTTATCGTTTGAACTTCCTTTTGCTTTGATTCCACTCCTCAAGTTCAGTAGCAGCAAAACCAAGATGGGAGCTCATGTCAACTCTATCACGATTTCAGCTGTTACTTGGGTCATTGGTTCTCTCATCATGGCCATAAATATATACTATTTACTCACAGCCTTCATCAAGTTGCTTCTTCAGAGCGACTTGAAAATAGTGGCTAAGGCTTTTCTGGGGATCTTAGGATTTTCAGGGATAGCGGTATATTTGGCTGGAATTGCGCATCTGGTGTTTCGCAAAAACAAAGAGGCTACACACCTTTTGGCACTAACAACACCTGAAAGTGGGCAAACGGGAAATGAGCAATGCGATGGATCAATGTATTGTCTCCCTAGAGAAGACATTGTAAGCATGCAATTGCCTCAAAGAAGTGACCCCCGAGATATCTAA 1632 0.4246 MASTVSTSRQPQFIASTGNRSSSNAPLIDNSDTDQIVVPDKTSWKNFFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSMAANLGVVTGKHLAEHCRAEYPRATNFILWVLAEVAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFMVFTIAACFFAEMGYAKPDAKEVLEGLFVPKLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVHGIKEACRFYMIESAFALMVAFLINVSVISVSGAVCNSSNLIAEDQKNCQDLDLNKASFLLRNVLGAWSSKLFAVALLASGQSSTITGTYAGQYVMQGFLDLRLTPWIRNLLTRCLAIVPSLIVAVIGGSAGAGKLIIIASMILSFELPFALIPLLKFSSSKTKMGAHVNSITISAVTWVIGSLIMAINIYYLLTAFIKLLLQSDLKIVAKAFLGILGFSGIAVYLAGIAHLVFRKNKEATHLLALTTPESGQTGNEQCDGSMYCLPREDIVSMQLPQRSDPRDI 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0099 543 Pfam Natural resistance-associated macrophage protein 67 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi06g0099 543 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 23 497 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi06g0099 543 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi06g0099 543 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi06g0099 543 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi06g0099 543 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi06g0099 543 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi06g0099 543 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi06g0099 543 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi06g0099 543 NCBIfam Nramp family divalent metal transporter 52 420 - -
Glsi06g0099 543 MobiDBLite consensus disorder prediction 1 28 - -
Glsi06g0099 543 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Glsi06g0099 543 Hamap Divalent metal cation transporter MntH [mntH]. 32 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0099 Glsi-ChrGlsi06 721432 727014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0099 15 537 Inorganic Solute Cotransporters AT1G15960 79.429 0.0 863