Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0079 ATGCCTTCAAGACCCTTCCCTCCTACTCCCAACCCTCCAAGTCCCAGTTTTATCATCAAAGCCAGGGTCCTGTTCTTGGCACTCACTATCTCAGCGTCTGTTGTAATTTTCTGCTCAGTCCTCTACTTTCTTTACCACCTATGGCACTCTCTTGTACACAGAGCTAAAACCATCCCGTTTGATGCAAGTGCTCCCTTGAAGCTCCAAAGATTCTCATACAAAGAGCTAAAGCTAGCCACCAATGGCTTTGACACTGCCAATGTCATGGGTAAAGGGGGCTCTGGCACCGTTTTCAGGGGAATACTTAAAGACGGGAAATTGATTGCTATTAAGCGCCTAGACGCGTTGTCTTTGCAGACAGAGCGAGAGTTTCAGAATGAGCTGCAGATTCTCGGTGGGTTAAGATCTCCGTTCCTGGTCACCCTTTTGGGATATTGTGTGGAAAAGAACAAAAGAGTGTTGGTATATGAGTATGCGCCCAACAGAAGCTTGCAGGAGTCCCTCTTTGGAGATGGGTGTTTGGTGTTGAGCTGGGAGAGAAGGTTTCACATCATGTTGGATGTTGCTAGAGCTTTGGAATTCTTGCACCTTGGATGTGATCCTCCAGTGATCCATGGGGATATCAAGCCAAGCAATGTTCTGCTCGATGCAGAGTACCGTGGGAAAATTTCAGACTTCGGATTGTCAAGGATTAAAGTGGAGAATGAGTTTGGTGTAGATTTGTTTAGCCAGGACTTGGGGAAGAGTCAAGAGCTATGGAAGAGCCAAGAACTTTCAGGTAATTTAACTGCAGAAACCCCTGCTATTGGTACACCAGTTGAGAGTGTTAACGAGGTAGATTTTGCTTTAGCTTTGCAAGCCTCTTCTTCGTCCAAAAATAGTAAGACATGTTTTAATGTTAAGGCTTTGAATTTGAATTCTTTAAATTATAATGCCAATATTGCCAGTGAGAGCGAAATCAGGAGCTGTAATGTTAAGGGGAAGGAAATATCAACTCTAGATATTGGCGGCGATTATTGGAATAATAAGTTTGTTCCTTATGATGATGAGTTTTCTAGCATTGATCATAGTAAAGAGTTAATTGTTAATGCTTCCCCGGTGGATGATGAGAAGGTAAATGGGAAACAATGGGGAAAGGACTGGTGGTGGAGACAGGATGGAAGTGATGAATTATGTAGTAGAGACTATGTAATGGAGTGGATAGGGAGTCAAATTTGTCCATCAAATCCGGATTGGGATGAAGAAAAGAAGAATGTTCATGAGAAGACGGAGTTGGAAAACTCAAATCCAATAGATAAAGCAGATGATGCAAATGGGCCCCAATTACAAGCATTTGGAATAGGAATTACAGATAATGTGGTTGAGAAGAAAGAACCAAGGGGAAAGAAAAATCGTAAGAAGCACAGGAAGATGCAAGAGTGGTGGAAAGAAGAGCACCTTGCTGAATTAAGCAAGAAGAGTAGTAAGCTGAAAAATTTTCAAACTAAGTGGAAGAAAGGCTTCAAAGTACCCCATTTTGATTTGGGTAGAAGGTTTTATTTTTGCAGACGTAAGAACCTTGCACAAGAGTCTCAGAATGAGTGTGATCTGAATGGGGAGTTTAGTTTCAGACGAGGTTGGAAGAAGAAAAGTACTCGTTCCATTGGCAGTGACATGTGGAGTGGAGATCTTTTCAGCCGCGAGCTCAGCAGCACAACTAGCATGAGAGGGACACTGTGTTATGTTGCACCAGAATATGGCGGGTGTGGGTACTTGATGGAGAAGGCTGACATTTACAGTTTAGGAGTTTTGATCCTCGTAATTGTGTCAGGAAGAAGACCATTACATGTTCTCGCATCTCCCATGAAGCTGGAGAAAGCTAACTTAATAAGCTGGTGTAGGCACTTGGCTCATGCTGGTAACATTTTAGAACTTGTAGACGAGAGATTGAAAGATTACAACAAGGAACAAGCTTGCTTGTGTATCAACTTGGCCCTCACTTGCTTACAGAAAATTCCAGAGTTGCGGCCAGATATTGGGGATATTGTCAAGATTTTGAAGGGGGAGATGGATCTCCCACCACTTCCATTTGAGTTTTCCCCCTCCCCGCCTTCCAAATTTTACAGCAGATCAAGGACAAAACAGAAGGGCGCTACAGAATAG 2142 0.4309 MPSRPFPPTPNPPSPSFIIKARVLFLALTISASVVIFCSVLYFLYHLWHSLVHRAKTIPFDASAPLKLQRFSYKELKLATNGFDTANVMGKGGSGTVFRGILKDGKLIAIKRLDALSLQTEREFQNELQILGGLRSPFLVTLLGYCVEKNKRVLVYEYAPNRSLQESLFGDGCLVLSWERRFHIMLDVARALEFLHLGCDPPVIHGDIKPSNVLLDAEYRGKISDFGLSRIKVENEFGVDLFSQDLGKSQELWKSQELSGNLTAETPAIGTPVESVNEVDFALALQASSSSKNSKTCFNVKALNLNSLNYNANIASESEIRSCNVKGKEISTLDIGGDYWNNKFVPYDDEFSSIDHSKELIVNASPVDDEKVNGKQWGKDWWWRQDGSDELCSRDYVMEWIGSQICPSNPDWDEEKKNVHEKTELENSNPIDKADDANGPQLQAFGIGITDNVVEKKEPRGKKNRKKHRKMQEWWKEEHLAELSKKSSKLKNFQTKWKKGFKVPHFDLGRRFYFCRRKNLAQESQNECDLNGEFSFRRGWKKKSTRSIGSDMWSGDLFSRELSSTTSMRGTLCYVAPEYGGCGYLMEKADIYSLGVLILVIVSGRRPLHVLASPMKLEKANLISWCRHLAHAGNILELVDERLKDYNKEQACLCINLALTCLQKIPELRPDIGDIVKILKGEMDLPPLPFEFSPSPPSKFYSRSRTKQKGATE 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0079 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Glsi06g0079 713 MobiDBLite consensus disorder prediction 697 713 - -
Glsi06g0079 713 FunFam putative receptor-like protein kinase At1g80870 159 270 - -
Glsi06g0079 713 SUPERFAMILY Protein kinase-like (PK-like) 63 700 IPR011009 -
Glsi06g0079 713 FunFam Receptor-like serine/threonine-protein kinase At4g25390 537 685 - -
Glsi06g0079 713 ProSiteProfiles Protein kinase domain profile. 83 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0079 713 PANTHER OS07G0586332 PROTEIN 1 708 IPR044576 -
Glsi06g0079 713 Pfam Protein kinase domain 85 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0079 713 Gene3D Transferase(Phosphotransferase) domain 1 160 271 - -
Glsi06g0079 713 Gene3D Transferase(Phosphotransferase) domain 1 541 685 - -
Glsi06g0079 713 MobiDBLite consensus disorder prediction 411 438 - -
Glsi06g0079 713 MobiDBLite consensus disorder prediction 691 713 - -
Glsi06g0079 713 FunFam Receptor-like serine/threonine-protein kinase At4g25390 52 158 - -
Glsi06g0079 713 Gene3D Phosphorylase Kinase; domain 1 59 158 - -
Glsi06g0079 713 MobiDBLite consensus disorder prediction 411 431 - -
Glsi06g0079 713 SMART serkin_6 83 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0079 Glsi-ChrGlsi06 641368 643509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0079 548 679 Receptor kinase-like Gene Family AT3G58690 31.343 2.87e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Glsi06g0079 Pkinase 1.7e-27 CL0016