Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0065 ATGGTTTTCTTAGGGGCATTGTTCTTCCTTCTACTTCAGTGCCCAATTTCAATGTTTAGTCTCTCACTTCCAAGGCATCACCACTCTTCTCACTCTTTGTTTACAGATAAGGCTGCTCTTCTGGAATTCAAAAAAACAATCATATCTGATCCATATTCCACACTTGCTAACTGGGATGAAGCTGTTCATGTGTGCAATTTCACTGGTGTTATATGCGATGAATTCCAGCACCGTGTAGTACGACTAATCCTGCATGAAACTCACCTCGTGGGGCTGCTTTCACCCTTCCTTTCCAATCTCACCGGGCTGCACATCCTTGAGATTGTTGACAATTACTTATTTGGCATTATTCCACCTGAATTTTCTTCTCTTAAAGGTCTCCACCGCCTCCGTCTTGAGGGGAACAATTTGCATGGTTCCATACCAGAGTCCTTTTCCCAGCTTCCCAAACTTAAATTGCTTTATATTAAAGAAAGTAATATAACTGGTTCACTTCCTCCATCTCTCTTCTCCAATTGCACTCTACTAGATAATGTGGACCTTTCCAGCAACTTCCTCACAGGTAAGATCCCAGAAGAGATTGGAAACTGCCTAGACCTTTGGAGTCTCAATCTATACAATAATCAATTTACTGGACAGATTCCTCTTTCTTTAACCAATGTATCACTTATAAACTTAGATGTAGAGTCCAATCATTTGTCCGGTGAATTGCCTTCAGACCTTGTAAGCAGCTGGCCCGAACTTCTTTTCCTACATTTATCATACAACCATATGGTAAGTCATGACAGTAATAGCAATCTTGATCCATTTTTCACTGCTCTTACAAACTGCAGCAATCTAGAAGAGCTTGAATTGGCAGGCATGGACCTTGGGGGAAGGTTCTCCAATATAGTCAGCCAAGTTGGCATCAGTCTAAGAAGTCTACTACTGCAGGAAAACCAAATATATGGATCAATTCCTCAGAGTGTAGGAAATCTTTCTAGCCTTTTGATGCTAAATTTAACATCCAATCTTCTAAATGGAACTATTCCACCAGAGATCAGCAGGTTGTCACAGTTGGAACAACTTTTCTTATCACACAACCATTTCAAAACTGCAATTCCAGAGGCACTGGGGAACTGTCTACATCTGGGTCTGCTAGATCTGTCACACAATGAATTTTCAGGTGGGATTCCAGAAAGTATAGGAAATTTGGTTCAACTAATTGATTTGTTTCTCAACAATAACCTTCTCACAGGAAAAATACCTTCTACATTGGGGCAGTGCATTGATCTGTACAGGCTAGACTTGTCCTATAATAGATTAACAGGAAGCATCCCACCGGAACTCTCTGGCCTGCATGAAATTAGAATTTTCATAAATCTATCACATAACCACCTTGAAGGTCCCCTGCCAATTGAGTTCAGCAAACTAGAAAAGGTTCAAGAGATGGATCTTTCGTCAAATTACCTAACTGGAAGTATCTTCCCTCAGATAGCGAGCTGCATTGCTGTGTCGATGATAAATTTTTCAAACAATTTTCTACAAGGTGAGCTTCCAGAATCCTTAGGTGAACTGAAGAACCTCGTATCCTTCGATGTTTCAAGAAATCAATTGTCTGGATTCATCCCAACAACTCTTAGTAAAATTGACACGCTTACTTTCCTCAATGTATCATTTAACAACCTAAAAGGAATGGTTCCGTCTGGTGGTATCTTTAATTCAGCATCAAGTTTGTCATTTTTAGGAAATCCACGTCTATGTGGGGCAATTACAGGCAAATCCTTCTGTTCTCAAAGGATACAGTGGTTTCGCACTCGTCTGTTCCTGGTTATATTCGTCTTAATCATCTCCATATCAACATTCTTGTCAACAATTTGCTGCGTAATTGGATATAAGCGTCTTAAAGTACTTATTTCCTCCCGGGGGACTGAGGCAGGTAGAAACCCAGTGAGACCTGAACTGGTTTGTAATTTCCCAAGAATCACATATAAGGAACTATCTGAGGCCACCGAAGGATTTGATGATCAGAGACTAGTTGGATCAGGTAGCTATGGACGTGTCTACAGGGGAGTTCTTCCAGATGGGACGCCAATAGCCATCAAGGTGCTGCATTTGCAATCTGGAAATTCCACGAAGAGCTTTAACAGAGAATGCCAAGTTTTAAAGAGGATTCGACACAGGAACCTGATAAGAATTATCACTGCATGTAGTTTACCAGATTTTAAGGCTCTTGTGCTGCCTTATATGGCCAATGGGAGCTTGGAGAGCTGCCTCTACCCTTCTTCTGGATCTTCAGACTTGAGTATCGTCCAGAGGGTGAACATTTGCAGTGACATAGCTGAAGGGATGGCCTATCTGCATCATCATTCTCCAGTAGGAGTCATACACTGTGATCTAAAACCAAGCAATGTTCTTCTTAATGATGACATGACAGCTCTAGTTTCCGATTTTGGAATTGCTAGATTAGTTATGAGTGCCGGAGGAGGAAATGCTGGAGTTAATGATAACATGGGGTGTTCCACTGCAAATTTGTTATGTGGATCCATCGGATACATTGCACCAGAGTATGGATGTGGATCAAATACATCTACAAAAGGAGATGTTTACAGCTTTGGCGTTCTAGTTCTTGAGACGGTGACCAGAAAAAGACCAACAGATGACATATTTGTTGGTGGCTTGTGTCTGCACAAGTGGGTTAAAAGTCACATTTATGGAAGGCTAGAAAAAGTGATAGACCCCGCTTTGGTGACAGCTTCAAGAGATCAGCCGCGGGAGGTGAAAGAGATGTGGGAAGTCGCAACTGCGGAGTTAATTGAGCTGGGGCTCCTTTGCACACAGGAGTCACCTTCTACAAGGCCTTCCATGCTTGATGCAGCAGATGACATGAATCGTCTTAAGAGATATCTTAATGAGGACACAACTGGGACTTTTGCCTCATCTGGAATTTCATCTTCCACTGTAGGTGATGAATAA 2955 0.4169 MVFLGALFFLLLQCPISMFSLSLPRHHHSSHSLFTDKAALLEFKKTIISDPYSTLANWDEAVHVCNFTGVICDEFQHRVVRLILHETHLVGLLSPFLSNLTGLHILEIVDNYLFGIIPPEFSSLKGLHRLRLEGNNLHGSIPESFSQLPKLKLLYIKESNITGSLPPSLFSNCTLLDNVDLSSNFLTGKIPEEIGNCLDLWSLNLYNNQFTGQIPLSLTNVSLINLDVESNHLSGELPSDLVSSWPELLFLHLSYNHMVSHDSNSNLDPFFTALTNCSNLEELELAGMDLGGRFSNIVSQVGISLRSLLLQENQIYGSIPQSVGNLSSLLMLNLTSNLLNGTIPPEISRLSQLEQLFLSHNHFKTAIPEALGNCLHLGLLDLSHNEFSGGIPESIGNLVQLIDLFLNNNLLTGKIPSTLGQCIDLYRLDLSYNRLTGSIPPELSGLHEIRIFINLSHNHLEGPLPIEFSKLEKVQEMDLSSNYLTGSIFPQIASCIAVSMINFSNNFLQGELPESLGELKNLVSFDVSRNQLSGFIPTTLSKIDTLTFLNVSFNNLKGMVPSGGIFNSASSLSFLGNPRLCGAITGKSFCSQRIQWFRTRLFLVIFVLIISISTFLSTICCVIGYKRLKVLISSRGTEAGRNPVRPELVCNFPRITYKELSEATEGFDDQRLVGSGSYGRVYRGVLPDGTPIAIKVLHLQSGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLESCLYPSSGSSDLSIVQRVNICSDIAEGMAYLHHHSPVGVIHCDLKPSNVLLNDDMTALVSDFGIARLVMSAGGGNAGVNDNMGCSTANLLCGSIGYIAPEYGCGSNTSTKGDVYSFGVLVLETVTRKRPTDDIFVGGLCLHKWVKSHIYGRLEKVIDPALVTASRDQPREVKEMWEVATAELIELGLLCTQESPSTRPSMLDAADDMNRLKRYLNEDTTGTFASSGISSSTVGDE 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0065 984 Gene3D Transferase(Phosphotransferase) domain 1 743 974 - -
Glsi06g0065 984 SUPERFAMILY L domain-like 34 290 - -
Glsi06g0065 984 SMART serkin_6 667 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0065 984 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Glsi06g0065 984 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 648 742 - -
Glsi06g0065 984 SUPERFAMILY L domain-like 301 582 - -
Glsi06g0065 984 Pfam Protein kinase domain 668 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0065 984 SMART LRR_typ_2 124 147 IPR003591 -
Glsi06g0065 984 SMART LRR_typ_2 398 422 IPR003591 -
Glsi06g0065 984 SMART LRR_typ_2 350 374 IPR003591 -
Glsi06g0065 984 SMART LRR_typ_2 519 542 IPR003591 -
Glsi06g0065 984 SMART LRR_typ_2 148 172 IPR003591 -
Glsi06g0065 984 FunFam Leucine-rich repeat receptor-like protein kinase 34 192 - -
Glsi06g0065 984 Gene3D Ribonuclease Inhibitor 263 595 IPR032675 -
Glsi06g0065 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672|GO:0006468
Glsi06g0065 984 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 384 956 - -
Glsi06g0065 984 Gene3D Phosphorylase Kinase; domain 1 649 742 - -
Glsi06g0065 984 CDD STKc_IRAK 673 959 - -
Glsi06g0065 984 ProSitePatterns Protein kinases ATP-binding region signature. 673 695 IPR017441 GO:0005524
Glsi06g0065 984 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 743 968 - -
Glsi06g0065 984 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 466 590 - -
Glsi06g0065 984 Gene3D Ribonuclease Inhibitor 34 192 IPR032675 -
Glsi06g0065 984 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 261 465 - -
Glsi06g0065 984 SUPERFAMILY Protein kinase-like (PK-like) 645 954 IPR011009 -
Glsi06g0065 984 Pfam Leucine rich repeat 102 158 IPR001611 GO:0005515
Glsi06g0065 984 Pfam Leucine rich repeat 304 363 IPR001611 GO:0005515
Glsi06g0065 984 ProSiteProfiles Protein kinase domain profile. 667 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0065 984 Gene3D Ribonuclease Inhibitor 193 262 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0065 Glsi-ChrGlsi06 594542 597888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0065 35 946 Receptor kinase-like Gene Family AT3G47570 34.573 5.25e-163 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Glsi06g0065 Pkinase 2.9e-40 CL0016