Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0059 ATGGCAAAGATATCACAGAAAAAGCTCAAGAACAGTACTTCGAGCACTAACACCACCTCCACGAAGGTGAAGCGAACACGCAAAAGCGTCCCAAGAGACTCTCCTCCCCAACGAAGCTCCATCTTCCGGGGCGTCACAAGGCATCGTTGGACGGGTCGATACGAGGCTCATCTGTGGGATAAGAATTGCTGGAATGAGTCACAGAACAAGAAAGGAAGACAAGGGGCATATGATGATGAAGAAGCCGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAAGACTCTATCCTCAATTTTCCTTTATCAAATTATGAAGAAGAGCTCAAGGAGATGGAGGGTCAGTCAAAAGAAGAATACATTGGATCCTTAAGAAGAAAAAGCAGTGGGTTCTCTCGAGGAGTCTCAAAATATAGAGGCGTAGCAAGACACCATCATAATGGAAGGTGGGAGGCTCGGATTGGCAGAGTCTTTGGCAACAAATATCTATACCTTGGAACTTACGCTACACAAGAAGAAGCAGCCACGGCATATGATATGGCAGCCATAGAGTACCGCGGACTTAACGCCGTTACAAACTTTGACCTCAGCCGTTACATCAAATGGATACGTCCTAACACTCAAGACAACCATGAAAACCCTAATAACTCTGAACCCAACCCCAATCCTGAACTTGAACTAGGCTTTGTTTCCCACCAGCTCAGCTTAAACTCCGGCGACACAGAAGCAGCAGCAGCTCCTCCACGATCCGGCGGCGGTGCCTCCGCATCATCTGCGCTGGGGCTTCTCTTGCAATCATCAAAGTTCAAAGAAATGCTAGAAAGGACTTCAACTGCGGATCATTACCCTCCAACAACTTCGGAATCAAACCCTCCTCGTCGTACTTTCCCCGAAGATATTCAGACATTCTTTGATTGTGAAGACTCGGGAAGCTACACGGCGTCTGATGACATAATATTTGGTGATTTGAGTTCAATTGCTGCGCCAATTTTTCACTGCGAGCTTGATGCTTAA 1023 0.4731 MAKISQKKLKNSTSSTNTTSTKVKRTRKSVPRDSPPQRSSIFRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAARAYDLAALKYWGQDSILNFPLSNYEEELKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWIRPNTQDNHENPNNSEPNPNPELELGFVSHQLSLNSGDTEAAAAPPRSGGGASASSALGLLLQSSKFKEMLERTSTADHYPPTTSESNPPRRTFPEDIQTFFDCEDSGSYTASDDIIFGDLSSIAAPIFHCELDA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0059 340 MobiDBLite consensus disorder prediction 282 298 - -
Glsi06g0059 340 CDD AP2 139 200 IPR001471 GO:0003700|GO:0006355
Glsi06g0059 340 Pfam AP2 domain 42 96 IPR001471 GO:0003700|GO:0006355
Glsi06g0059 340 Pfam AP2 domain 139 190 IPR001471 GO:0003700|GO:0006355
Glsi06g0059 340 MobiDBLite consensus disorder prediction 1 44 - -
Glsi06g0059 340 MobiDBLite consensus disorder prediction 209 225 - -
Glsi06g0059 340 SUPERFAMILY DNA-binding domain 139 200 IPR016177 GO:0003677
Glsi06g0059 340 MobiDBLite consensus disorder prediction 241 260 - -
Glsi06g0059 340 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 226 - -
Glsi06g0059 340 FunFam AP2-like ethylene-responsive transcription factor 40 106 - -
Glsi06g0059 340 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Glsi06g0059 340 PRINTS Ethylene responsive element binding protein signature 180 200 IPR001471 GO:0003700|GO:0006355
Glsi06g0059 340 MobiDBLite consensus disorder prediction 1 24 - -
Glsi06g0059 340 SUPERFAMILY DNA-binding domain 40 106 IPR016177 GO:0003677
Glsi06g0059 340 MobiDBLite consensus disorder prediction 278 298 - -
Glsi06g0059 340 FunFam AP2-like ethylene-responsive transcription factor 139 200 - -
Glsi06g0059 340 SMART rav1_2 41 110 IPR001471 GO:0003700|GO:0006355
Glsi06g0059 340 SMART rav1_2 140 204 IPR001471 GO:0003700|GO:0006355
Glsi06g0059 340 ProSiteProfiles AP2/ERF domain profile. 140 198 IPR001471 GO:0003700|GO:0006355
Glsi06g0059 340 Gene3D AP2/ERF domain 139 200 IPR036955 GO:0003700|GO:0006355
Glsi06g0059 340 Gene3D AP2/ERF domain 41 106 IPR036955 GO:0003700|GO:0006355
Glsi06g0059 340 ProSiteProfiles AP2/ERF domain profile. 41 104 IPR001471 GO:0003700|GO:0006355
Glsi06g0059 340 MobiDBLite consensus disorder prediction 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0059 Glsi-ChrGlsi06 531773 534945 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0059 37 202 AP2-EREBP Transcription Factor Family AT5G57390 71.598 3.55e-86 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Glsi06g0059 AP2 3.4e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g0059 06 531773 534945 Glsi06g0059 06 531773 534945 ECH