Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0058 ATGGAGAAATACGAGAAGCTGGAGAAGGTTGGAGAAGGAACTTATGGAAAGGTATACAAGGCGAAGGAGAAGGCCACTGGGCAGCTGGTGGCTTTGAAGAAGACGCGTTTGGAGATGGACGAAGAGGGAATTCCCCCAACTGCTCTTCGAGAAGTCTCCCTCCTTCAGATGCTCTCCCAGTCCCTCTACATTGTCCGCCTCCTCTCTGTCGAGCACGTGGACAAGACCCCGAAGGAGGCGCCTGCCGCTGGTAGCCATCCTTGTTCCAAGCCCCTCCTTTATCTCGTCTTTGAGTACCTTGACACTGATCTTAAGAAGTTCATTGATTCCCACCGCAAGGGTCCCAATCCCAGGCCCCTTCCTCCTTCCCTTATTCAGAGCTTCCTCTTCCAGCTCTGCAAGGGTGTCGCCCACTGCCACAGCCACGGCGTCCTTCATCGTGACCTCAAACCCCAGAATCTTCTTCTTGACCAGCAGAAGGGAATTCTCAAGATTGCTGACCTTGGTCTTGGACGAGCCTTCACTGTCCCTCTTAAGAGCTACACGCATGAGATTGTCACTCTTTGGTACAGAGCACCGGAGGTTCTGTTGGGATCCACCCATTACTCCACTGGAGTTGACATGTGGTCCGTTGGATGCATTTTCGCTGAAATGGTGAGAAGGCAAGCTCTGTTTCCTGGGGATTCTGAGTTCCAACAGCTCCTTAATATTTTCAGGTTGTTGGGAACTCCGACTGAGGAGCAATGGCCAGGAGTTACTTCTTTGCGGGATTGGCATGTCTACCCGCGGTGGGAACCACAGAATTTGGCGCGGGCTGTTCCATCCTTAGGACCTGATGGAGTAGATCTTCTCTCGCAAATGCTCAAGTTTAACCCTGTTGAGAGAATCTCTGCCAAGGCGGCACTTGATCATCCCTACTTTGACAGCCTTGACAAGTCTCAATTTTAG 948 0.5179 MEKYEKLEKVGEGTYGKVYKAKEKATGQLVALKKTRLEMDEEGIPPTALREVSLLQMLSQSLYIVRLLSVEHVDKTPKEAPAAGSHPCSKPLLYLVFEYLDTDLKKFIDSHRKGPNPRPLPPSLIQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQQKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDMWSVGCIFAEMVRRQALFPGDSEFQQLLNIFRLLGTPTEEQWPGVTSLRDWHVYPRWEPQNLARAVPSLGPDGVDLLSQMLKFNPVERISAKAALDHPYFDSLDKSQF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0058 315 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Glsi06g0058 315 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Glsi06g0058 315 Gene3D Phosphorylase Kinase; domain 1 1 101 - -
Glsi06g0058 315 SUPERFAMILY Protein kinase-like (PK-like) 1 310 IPR011009 -
Glsi06g0058 315 ProSiteProfiles Protein kinase domain profile. 4 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0058 315 FunFam Cyclin-dependent kinase B2,2 1 101 - -
Glsi06g0058 315 SMART serkin_6 4 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0058 315 Pfam Protein kinase domain 4 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0058 315 FunFam Cyclin-dependent kinase 2 103 314 - -
Glsi06g0058 315 PANTHER CELL DIVISION PROTEIN KINASE 1 307 - -
Glsi06g0058 315 Gene3D Transferase(Phosphotransferase) domain 1 103 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0058 Glsi-ChrGlsi06 524464 526663 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0058 1 315 Core Cell Cycle Gene Families AT3G54180 83.175 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Glsi06g0058 Pkinase 2.5e-65 CL0016