Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0049 ATGGCTTCTGAAAATCACCAACAAAAAGACTTCATTTTCAGGTCCAAACTTCCTGATATCTACATCCCCAACCACCTTCCCCTGCATTCTTATTGCTTTGAAAACCTTTCTGAGTTTGGATCACGCCCCTGTTTGATCAATGCCCCAACTGGGGACATCTACACTTACAACGACGTCGAGCTCACAGCGCGAAGAGTTGCCTCAGGGCTTAACAAATTGGGCATCAAACAAGGTGAGGTGATCATGGTTTTGCTCCCCAGTTCACCAGAATTCGTGTTTGCTTTTCTGGGTGCGTCTTATCGTGGTGCTGTGACCACCGCTGCCAATCCCTTCTTCACACCCGCTGAGATAGGAAAACAAGCAAAAGCTTCCAACGTAAAGCTGCTCATAACCCAAGCTAGCTACTACGAGAAGGTGAAGGATTTGGATGTGAAGCTCATGTTCGTGGACTCGCCCCCAGATGGGCATTCAAATTTCTCAGAGCTATCCGAGGGCGATGAGAATGAAATGGCAGAAGTGGAAATCCAGCCTGATGATGTGGTGGCATTGCCTTATTCGTCAGGGACAACTGGGTTGCCAAAAGGGGTGATGCTAACACACAAAGGGTTGGTGACTAGCATATCGCAGCAGGTGGATGGGGAGAATCCCAACTTGTATTTCAACAGTGAGGATGTGATTCTATGCGTGCTTCCCATGTTTCATATCTACTCGCTCAACTCTGTTTTGCTGTGTGGGTTAAGAGCAAAAACTGCCATTTTGATAATGCCGAAGTTCGAGATAAATGCGTTGCTGGGTTTGATACAGAAATACAAGGTGACAATTGCCTCGGTTGTGCCACCAATAGTGTTGGCCATTGCCAAGTCACCACATCTTGATAACTATGACCTTTCTTCCATCAGGGTGTTGAAGTCCGGAGGGGCTCCTTTGGGCAAAGAACTTGAAGACGCTGTCAGAGCCAAATTCCCCAAGGCTAAACTTGGTCAGGGATACGGAATGACAGAGGCAGGACCGGTGCTGACAATGTGCTTGGCATTTGCAAAGGAGGCACTGAATGCGAAAGCAGGAGCTTGTGGAACTGTCGTTAGAAATGCAGAGATGAAGATTGTGGACCCTCTAACTTCTCTTTCTTTGCCTCCAAACCAGACCGGTGAGATCTGTATCAGGGGCGATCAGATCATGAAAGGTTATCTTAACGATCCGGAAGCCACGGAGAGAACCATAGACAAGGAGGGATGGTTGCACACGGGTGACATTGGCTACGTCGACGATGACGACGAGCTGTTCATCGTTGATAGGCTGAAGGAACTGATCAAGTACAAAGGGTTCCAGGTGGCCCCAGCTGAACTGGAAGCCCTCCTTCTCTCTCATCCTCACATCGCTGACGCTGCAGTCGTCCCAATGAAGGATGAAGCAGCTGGAGAGGTGCCTGTTGCATTTGTGGTGAGATCAAACGGTCATACGCACACCGCCGAGGATGAAATTAAGCAGTTCATCTCAAAACAGGTGGTGTTTTATAAAAGAATAAACAGAGTATTCTTCATCGATGCCATTCCCAAGTCACCATCAGGCAAAATCTTACGGAAGGATCTAAGAGCAAAACTAGCAGATGCTGTTCCAAAGTAA 1623 0.4781 MASENHQQKDFIFRSKLPDIYIPNHLPLHSYCFENLSEFGSRPCLINAPTGDIYTYNDVELTARRVASGLNKLGIKQGEVIMVLLPSSPEFVFAFLGASYRGAVTTAANPFFTPAEIGKQAKASNVKLLITQASYYEKVKDLDVKLMFVDSPPDGHSNFSELSEGDENEMAEVEIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSISQQVDGENPNLYFNSEDVILCVLPMFHIYSLNSVLLCGLRAKTAILIMPKFEINALLGLIQKYKVTIASVVPPIVLAIAKSPHLDNYDLSSIRVLKSGGAPLGKELEDAVRAKFPKAKLGQGYGMTEAGPVLTMCLAFAKEALNAKAGACGTVVRNAEMKIVDPLTSLSLPPNQTGEICIRGDQIMKGYLNDPEATERTIDKEGWLHTGDIGYVDDDDELFIVDRLKELIKYKGFQVAPAELEALLLSHPHIADAAVVPMKDEAAGEVPVAFVVRSNGHTHTAEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKLADAVPK 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0049 540 Gene3D - 434 537 IPR045851 -
Glsi06g0049 540 Gene3D - 5 433 IPR042099 -
Glsi06g0049 540 CDD 4CL 22 530 - -
Glsi06g0049 540 SUPERFAMILY Acetyl-CoA synthetase-like 10 536 - -
Glsi06g0049 540 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 434 - -
Glsi06g0049 540 Pfam AMP-binding enzyme C-terminal domain 448 524 IPR025110 -
Glsi06g0049 540 Pfam AMP-binding enzyme 36 439 IPR000873 -
Glsi06g0049 540 ProSitePatterns Putative AMP-binding domain signature. 183 194 IPR020845 -
Glsi06g0049 540 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 532 - -
Glsi06g0049 540 FunFam 4-coumarate--CoA ligase 2 435 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0049 Glsi-ChrGlsi06 473638 476197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0049 5 502 Monolignol Biosynthesis Gene Families AT1G51680 70.450 0.0 707