Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0048 ATGGGGTACGTTTCAGATACAAATCAAATCAATATTGTCTTGATGACGTTCACCAGGAAAGAAAAATTTATTGATTTGTCAGTCCTTCCTTCTTTTAGCCTTCTGAGTACGGAAATGATTTCATTGTTGGCAATTTCCGTTTCTGCTCCCGACATAACTCGGAACTCTCTCTCCCTTACTTACAGAGCAAGAGACCTTTTGTGTGGGCCCCACTGGTTTAGTCTCTTTGAGATTTTTCGGCAGAGCTGGATCCACCCTGAAGATCTTCCTCATCAAACCCAGTTTCTTACGCAGATGGTTTCTGTAGAGGAGAAGATAGACATTGATTTTGATGAGGAGATCCCTTTTAGCTCTTCGCCATCTGCGAGGAAAGTCCATCCTTTTGATTCTGAGACAACTCATGTGCTTTCTCCTGTAAATTTGGCCAGCTCATCCATCTTTAAGCAAATAAAGATAAGACCTATCAGGAGCTTATACATTGTCTTGATTAGAGCGAAGATCAACATGTTGCTACCTTTTGGTCCCTTGGCCATATTGCTACATTATCTAACAGGAAAGCATGGATGGGTCTTCTTCTTCAGCTTATTGGGTATTACTCCTTTGGCAGAACGTCTGGGTTATGCTACTGAGCAGCTTGCAGTGTACACAGGACCAACAGTCGGGGGTCTGCTGAATGCCACTTTTGGCAATGCAACCGAAATGATTATATCAATTTATGCTTTGAAAAATGGGATGATCAGGGTTGTTCAGCAGTCTTTACTGGGATCAATCTTGTCAAATATGCTTCTAGTTCTTGGATGTGCCTTCTTTACTGGTGGAATTGTCCACTACAAAAAGGTTCAGGTTTTCAATAAGGCAGCTGCCGTTGTAAATTCTGGGTTGCTGTTGATGGCTGTGATGGGAATACTGTTTCCTGCTGTGCTTCACTTTACTCGCTCAGAGGTCCATTTTGGGAAGTCAGAAGTATCTCTGTCCAGATTCAGCAGCTGTATAATGCTAATTGCATATGCGAGCTACCTCTTCTTTCAACTAAGAAGTCAACACAATCTTTATAGTCCAGTTGGAGAGGAAGGAGATAGCAGTGAAAATTCTAATGAGGAAGAAGAAAGTGAATTAACTCAATGGGAAGCAATAGGCTGGCTTGCTATTTTGACAGCATGGGTTTCTATATTGTCTGGATACCTTGTAGATGCTATACAGGGGGCATCTGAGTCATGGAATATGCCTGTGGCATTTATTAGTGTAATATTGCTTCCAATTGTCGGAAATGCTGCAGAGCATGCAAGTGCTATCATGTTTGCCATGAAGGACAAGCTTGATATTACAATTGGAGTTGCTATTGGATCATCTACACAGATATCAATGTTTGTGATCCCCTTCTGTGTGGTTGTTGGGTGGTGCATGGGAAAAGATATGGACTTGAATTTTCAACTTTTTGAGACTGCCACTCTCTTTATCACTGTGCTAGTAGTAGCATTTATGTTGCAGGAAGGGACCTCAAATTACTTCAAAGGCTTGATGCTTATTCTATGCTATCTTATCGTTGCAGCCAGTTTTTTTGTACATGTAGACCCAACAGATGGTGATGACTGA 1593 0.4156 MGYVSDTNQINIVLMTFTRKEKFIDLSVLPSFSLLSTEMISLLAISVSAPDITRNSLSLTYRARDLLCGPHWFSLFEIFRQSWIHPEDLPHQTQFLTQMVSVEEKIDIDFDEEIPFSSSPSARKVHPFDSETTHVLSPVNLASSSIFKQIKIRPIRSLYIVLIRAKINMLLPFGPLAILLHYLTGKHGWVFFFSLLGITPLAERLGYATEQLAVYTGPTVGGLLNATFGNATEMIISIYALKNGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHYKKVQVFNKAAAVVNSGLLLMAVMGILFPAVLHFTRSEVHFGKSEVSLSRFSSCIMLIAYASYLFFQLRSQHNLYSPVGEEGDSSENSNEEEESELTQWEAIGWLAILTAWVSILSGYLVDAIQGASESWNMPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITIGVAIGSSTQISMFVIPFCVVVGWCMGKDMDLNFQLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDPTDGDD 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0048 530 NCBIfam calcium/proton exchanger 161 520 - -
Glsi06g0048 530 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 134 525 IPR004713 GO:0006812|GO:0008324|GO:0016020
Glsi06g0048 530 Gene3D - 218 358 IPR044880 -
Glsi06g0048 530 Gene3D - 365 521 IPR044880 -
Glsi06g0048 530 FunFam Vacuolar cation/proton exchanger 365 521 - -
Glsi06g0048 530 FunFam Vacuolar cation/proton exchanger 218 357 - -
Glsi06g0048 530 NCBIfam calcium/proton exchanger 170 520 IPR004798 GO:0006816|GO:0015369
Glsi06g0048 530 Pfam Sodium/calcium exchanger protein 378 517 IPR004837 GO:0016020|GO:0055085
Glsi06g0048 530 Pfam Sodium/calcium exchanger protein 189 344 IPR004837 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0048 Glsi-ChrGlsi06 462470 472780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0048 148 528 Antiporters AT3G13320 76.240 0.0 595