LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi06g0047	ATGTTTTCGATTGGAGCGCTCCGATTTGAGGTTACTCTACACGCGGTCCCTCTTTCTGAAGTGGTGCTTGAACCCGATTGGATCACGCTCCTCACGAGTCCTTGGGGAGCGTGGACCCTCAAACCTTATAAATCTCGATTCCCTGTTTTGGATGGCAACCTCTCCCTCAATCTAAAATTTCCATCTCGTAGCAAACCCAAACCCCTCAATTCTCAAAACCTAAACCCATTTGATATAAGAGCGGTTTCTATTTTTCCAGCCCATCAATCGGATACTATTCACCACCGAGTCATGAGACCGATCCAGCCGCCGACGCCGGGCACCGGACCAATCAATCGTCCGCGCCGCCGTAGAGACCTTACCTTACCCTTGCCGCAACGCGAGACATCATTAGCGGTGCCTCTTCCTCTGCCCCCTTCCAACTCGGCACCGTCGACGAGCCCCTCTCCCCAACAGGTCCCCGTCGCCGAGCTCGAACGGCTCAGCCGAATCGGTAGCGGAAGTGGGGGCACCGTCTACAAGGTCCTTCACCGACCTACAGGCCGTCTTTACGCGCTTAAGGTTATATACGGTCACCACGAAGATTCCGTTCGCCGTCAGATCCATCGTGAAATTCAGATCCTCCGAGACGTAGACGACCAGAACGTCGTCAAGTGCCATGACATGTACGATCATAATGGCGAAATCCAAGTCCTTCTTGAGTTCATGGACGGTGGGTCCTTGGAAGGGAAACACATCCCCCATGAACAACAGCTCGCAGATCTAGCCCGCCAGATTCTTCGTGGCCTGGCGTACCTCCACCGCCGTCATATCGTTCATCGAGATATCAAGCCGTCGAACCTTCTGATCAACTCTCGCAAGCAGGTCAAGATTGCTGATTTTGGTGTGGGTCGAATTCTGGCGCAAACTATGGATCCGTGTAATTCAGCGGTGGGTACCATCGCTTATATGAGCCCAGAGAGAATCAATACGGACATCAATGATGGGCAATATGATGCGTATGCCGGGGATATATGGAGCCTTGGGGTCAGTATTTTGGAATTCTACGTGGGTAGATTTCCATTCGCGGTGGGAAGGCAAGGAGATTGGGCAAGCTTGATGTGTGCAATTTGTATGTCTCAGCCGCCGGAGGCACCGGCTACGGCGTCCGTCGAATTCAGGGATTTTATATCGCGCTGTTTACAAAGAGATCCCTCGCGGAGGTGGACAGCCTCGCGTTTGTTGGGGCACCCTTTTATAGCTCCGGGAATAGGGCACCAGAACCAGGTTCACCAGAATCTTCATCAACTACTGCCTCCGCCCCGACCACTTTCTTCGTAG	1320	0.5295	MFSIGALRFEVTLHAVPLSEVVLEPDWITLLTSPWGAWTLKPYKSRFPVLDGNLSLNLKFPSRSKPKPLNSQNLNPFDIRAVSIFPAHQSDTIHHRVMRPIQPPTPGTGPINRPRRRRDLTLPLPQRETSLAVPLPLPPSNSAPSTSPSPQQVPVAELERLSRIGSGSGGTVYKVLHRPTGRLYALKVIYGHHEDSVRRQIHREIQILRDVDDQNVVKCHDMYDHNGEIQVLLEFMDGGSLEGKHIPHEQQLADLARQILRGLAYLHRRHIVHRDIKPSNLLINSRKQVKIADFGVGRILAQTMDPCNSAVGTIAYMSPERINTDINDGQYDAYAGDIWSLGVSILEFYVGRFPFAVGRQGDWASLMCAICMSQPPEAPATASVEFRDFISRCLQRDPSRRWTASRLLGHPFIAPGIGHQNQVHQNLHQLLPPPRPLSS	439

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi06g0047	439	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	271	283	IPR008271	GO:0004672\|GO:0006468
	Glsi06g0047	439	CDD	PKc_MAPKK_plant_like	156	413	-	-
	Glsi06g0047	439	Gene3D	Transferase(Phosphotransferase) domain 1	240	429	-	-
	Glsi06g0047	439	FunFam	Mitogen-activated protein kinase 2	238	425	-	-
	Glsi06g0047	439	PANTHER	MITOGEN-ACTIVATED KINASE KINASE KINASE	130	415	-	-
	Glsi06g0047	439	Pfam	Protein kinase domain	159	413	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g0047	439	ProSitePatterns	Protein kinases ATP-binding region signature.	164	187	IPR017441	GO:0005524
	Glsi06g0047	439	Gene3D	Phosphorylase Kinase; domain 1	141	237	-	-
	Glsi06g0047	439	SUPERFAMILY	Protein kinase-like (PK-like)	158	432	IPR011009	-
	Glsi06g0047	439	ProSiteProfiles	Protein kinase domain profile.	158	413	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g0047	439	SMART	serkin_6	158	413	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi06g0047	439	MobiDBLite	consensus disorder prediction	94	155	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi06g0047	Glsi-ChrGlsi06	460874	462356	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi06g0047	98	429	MAP Kinase Kinase Gene Family	AT1G51660	70.571	2.50e-170	480

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Glsi06g0047		Pkinase	1.1e-63	CL0016