Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0037 ATGACCTCCACCTCTCGCGGTTCCAACTGCTCCTCCAATGCCCTCCTCACCGTGACCGTCACCAGCCCCCATCACGACTCCGTCCCTCCCTCCGTCACCCATGACCTCGACGACGACGACATTCTTGTCGATCCCAACGATCCTTTTGACATTGCTCACACCAAGAATGCTCCGCCCGAGACCCTCAAGCGATGGAGACAAGCAGCGCTAGTGCTCAATGCTTCCCGGCGTTTTAGATATACTCTGGACTTGAACAAGGGTGACGAGGAAGCGCATAAGAAAGGCTTGATTAGAGCCCATGCCCAAGTCATACGAGCAGCATTGCTTTTCAGATTAGCTGGTGAACGTGAACTAGTCATAGGTACCGCAGTCGCACCCCCTACTCCGGTTTGTAAGTATGGAATCGGGCTCGAACAACTTATTTCAATGTTTAAGAATCAGAAAGTTGCAGGCTTATCAAATTTACTAAAATCAGATCCTAAGAAAGGAATTAATGGAGATGATGCTGATCTATTAAAAAGGAGAAATGCATTTGGAACGAATACATATCCTAGGAAAAAGGGGCGGAGTTTCTTGAGGTTTTTATGGGAATCTTGGCAAGATCTGACCCTTATCATATTGATGGTAGCAGCTGCGGTGTCATTGGGGCTTGGAATAAAAACAGAGGGCTTGGAAGAAGGATGGTATGATGGGGGGAGCATTGCTTTTGCAGTTTTTCTCGTCATTATAGTTACTGCTGTCAGTGATTATCGGCAATCTCTGCAGTTTCAGAATTTGAATGCAGAAAAACAAAATATACAATTGGAGGTCATTAGAGGTGGTAGAGCAACAAAGATATCTATATTTGATATTGTTGTTGGTGATGTTGTACCTCTTAAAATTGGAGATCAGGTTCCTGCTGATGGAGTTTTAATCACCGGTCACTCACTTGCCATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTGTTCACAAGGATCACAAAGCACCTTTTTTGATGTCTGGCTGCAAAGTATCAGATGGAGTTGGTGTTATGCTGATAACTGGTGTTGGTATCAACACGGAGTGGGGATTGTTGATGGCTAGCATCTCTGAGGATACTGGAGAGGAGACTCCGTTACAGGTACGTTTGAATGGAGTTGCAACTTTTATAGGCATAGTTGGTCTTTCAGTAGCTGTCTCCGTGCTAGCAATCCTCTTGGGCAGATACTTTTCTGGCAATACGAGAGATGCAGGTGGAACTGTCCAATTTGTTGCTGGCAAGACTAGTATTAGTGATACAATAGATGGGGTCATCAAAATTTTTACTATTGCAGTCACAATTGTGGTTGTTGCAGTTCCTGAAGGTCTTCCTCTGGCTGTTACCTTAACCCTGGCATACTCCATGCGTAAAATGATGGCAGACAAAGCATTGGTACGGAGGCTGTCAGCCTGTGAGACTATGGGCTCTGCAACAACGATTTGCAGTGATAAAACTGGAACATTGACCTTAAATCAGATGACAGTGGTTGAGGCATATGTTGGGAAGAAGAAATTGAATCCACCAGATGAGTCATCAGATTTGCATCCGGAAGTTTTATCTCTAATAAATGAGGGCATTGCACAGAATACTACTGGAAATGTTTTCGTGCCTAAGGATGGTGGAGAGACAGAGGTTTCAGGATCTCCTACAGAAAAGGCAATCCTTTCTTGGGCGGTCAAGTTGGGGATGAATTTTGATCTTATCAGATCATATTTGAAAGTTCTCCATGTCTTCCCCTTCAATTCTGAGAAAAAGCGAGGTGGTGTTGCGCTAAAGCGGGGGGATTCCAGTGTACATATACATTGGAAAGGAGCTGCAGAGATAGTGCTAGGCACATGCACTCAATATCTTGATTCAAATGGTTGCTTGCAATCTATTGAAGAAGAGAAGGACTTTTACAAGGCGGCTATTGATGACATGGCTGCTCGCAGCTTGCGTTGTGTTGCCATTGCACATAGATCATATGAATTGGACAAAGTTCCCTCTGATGAGGAGGATTTGGCTCAATGGTCCTTACCTGAACATGAGCTTGTTTTGCTTGCTATTGTTGGTATAAAGGATCCCTGTCGCCCGGGCGTCGAAGATGCAGTGAATTTATGCACTGAAGCCGGTATTAAGGTGCGTATGGTTACGGGAGACAATCTTCAAACGGCAAAGGCAATAGCTTTGGAGTGTGGGATACTGGCTTCACATGAGGATGCTGTTGAGCCGAAAATAATTGAAGGAAAGACATTCCGTGAATTATCTGAAAGAGAAAGGGAAGAAGTTGCTAAGAAAATTACAGTGATGGGGAGGTCTTCTCCTAATGATAAGCTTCTACTTGTTCAAGCACTGCGTAAAGTAGGTGAAGTTGTTGCTGTAACAGGAGATGGCACCAATGATGCTCCTGCGCTTCATGAGGCAGATATTGGTCTTTCTATGGGTATTCAAGGAACTGAAGTCGCAAAAGAAAGCTCAGATATTATAATCCTGGATGATAACTTCGCATCAGTAGTAAAGGTTGTTCGCTGGGGCCGTTCTGTATATGCAAATATTCAGAAATTTATACAGTTTCAGCTCACAGTTAATGTTGCAGCTCTTGTGATAAACGTCGTGGCAGCAATATCTTCTGGTGATGTTCCTTTAAATGCAGTACAGCTTTTGTGGGTCAACCTTATCATGGACACACTTGGGGCACTCGCACTGGCTACTGAACCACCAACAGACAGCCTTATGCACAGATCACCCGTTGGTCGAAGGGAACCTCTTGTAACAAACATAATGTGGAGGAACTTGATTGTACAGGCTGCGTATCAAATTACGATTCTCCTTGTTCTTAATTTCTGCGGTGGTAGAATTCTAAAAACCGATGGCTCTACAGCCCATGACTTCAAACTGAAGAATACTTTGATATTCAATTCATTCGTCCTCTGCCAAATATTCAATGAGTTCAATGCTCGAAAACCGGAGGAAATGAATGTGTTCCGCGGAGTGACCAAGAACCATCTCTTCGTGGGAATTGTGGGAACGACCTTTATACTTCAGGTACTCATCATCGAGTTCCTTGGAAAGTTCACCTCAACGGTGAGGCTTGATTGGAGGCTATGGCTTGCTTCTCTTTTAATTGGGCTTGTCAGCTGGCCTCTTGCTGTAGCTGGCAAATGCATTCCAGTTCCCAAAACACCATTGTCCCGCTACATTAGGCGATTAAGGAGATCACGTCCTCGTGCCGCAGAATAG 3243 0.4434 MTSTSRGSNCSSNALLTVTVTSPHHDSVPPSVTHDLDDDDILVDPNDPFDIAHTKNAPPETLKRWRQAALVLNASRRFRYTLDLNKGDEEAHKKGLIRAHAQVIRAALLFRLAGERELVIGTAVAPPTPVCKYGIGLEQLISMFKNQKVAGLSNLLKSDPKKGINGDDADLLKRRNAFGTNTYPRKKGRSFLRFLWESWQDLTLIILMVAAAVSLGLGIKTEGLEEGWYDGGSIAFAVFLVIIVTAVSDYRQSLQFQNLNAEKQNIQLEVIRGGRATKISIFDIVVGDVVPLKIGDQVPADGVLITGHSLAIDESSMTGESKIVHKDHKAPFLMSGCKVSDGVGVMLITGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVSVLAILLGRYFSGNTRDAGGTVQFVAGKTSISDTIDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGKKKLNPPDESSDLHPEVLSLINEGIAQNTTGNVFVPKDGGETEVSGSPTEKAILSWAVKLGMNFDLIRSYLKVLHVFPFNSEKKRGGVALKRGDSSVHIHWKGAAEIVLGTCTQYLDSNGCLQSIEEEKDFYKAAIDDMAARSLRCVAIAHRSYELDKVPSDEEDLAQWSLPEHELVLLAIVGIKDPCRPGVEDAVNLCTEAGIKVRMVTGDNLQTAKAIALECGILASHEDAVEPKIIEGKTFRELSEREREEVAKKITVMGRSSPNDKLLLVQALRKVGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMHRSPVGRREPLVTNIMWRNLIVQAAYQITILLVLNFCGGRILKTDGSTAHDFKLKNTLIFNSFVLCQIFNEFNARKPEEMNVFRGVTKNHLFVGIVGTTFILQVLIIEFLGKFTSTVRLDWRLWLASLLIGLVSWPLAVAGKCIPVPKTPLSRYIRRLRRSRPRAAE 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0037 1080 PANTHER CATION TRANSPORTING ATPASE 123 1059 - -
Glsi06g0037 1080 Pfam Cation transporting ATPase, C-terminus 881 1051 IPR006068 -
Glsi06g0037 1080 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 496 693 IPR023299 GO:0000166
Glsi06g0037 1080 PRINTS P-type cation-transporting ATPase superfamily signature 820 832 - -
Glsi06g0037 1080 PRINTS P-type cation-transporting ATPase superfamily signature 489 503 - -
Glsi06g0037 1080 PRINTS P-type cation-transporting ATPase superfamily signature 689 700 - -
Glsi06g0037 1080 PRINTS P-type cation-transporting ATPase superfamily signature 313 327 - -
Glsi06g0037 1080 PRINTS P-type cation-transporting ATPase superfamily signature 711 721 - -
Glsi06g0037 1080 PRINTS P-type cation-transporting ATPase superfamily signature 796 815 - -
Glsi06g0037 1080 SUPERFAMILY HAD-like 487 901 IPR036412 -
Glsi06g0037 1080 SMART Cation_ATPase_N_a_2 143 219 IPR004014 -
Glsi06g0037 1080 CDD P-type_ATPase_Ca_PMCA-like 171 929 - -
Glsi06g0037 1080 Gene3D - 59 111 - -
Glsi06g0037 1080 NCBIfam HAD-IC family P-type ATPase 426 518 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi06g0037 1080 NCBIfam HAD-IC family P-type ATPase 762 876 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi06g0037 1080 FunFam Calcium-transporting ATPase 9 plasma membrane-type 343 513 - -
Glsi06g0037 1080 SUPERFAMILY Calcium ATPase, transduction domain A 267 362 IPR008250 -
Glsi06g0037 1080 FunFam Calcium-transporting ATPase 499 696 - -
Glsi06g0037 1080 Pfam haloacid dehalogenase-like hydrolase 486 810 - -
Glsi06g0037 1080 Pfam E1-E2 ATPase 266 467 - -
Glsi06g0037 1080 FunFam Calcium-transporting ATPase 197 254 - -
Glsi06g0037 1080 Pfam Ca2+-ATPase N terminal autoinhibitory domain 46 86 IPR024750 GO:0005516
Glsi06g0037 1080 Gene3D - 170 365 - -
Glsi06g0037 1080 FunFam Calcium-transporting ATPase 813 1061 - -
Glsi06g0037 1080 SUPERFAMILY Calcium ATPase, transmembrane domain M 147 1059 IPR023298 -
Glsi06g0037 1080 PRINTS Sodium/potassium-transporting ATPase signature 482 503 - -
Glsi06g0037 1080 PRINTS Sodium/potassium-transporting ATPase signature 232 252 - -
Glsi06g0037 1080 PRINTS Sodium/potassium-transporting ATPase signature 608 626 - -
Glsi06g0037 1080 SFLD p-type atpase 471 848 IPR044492 -
Glsi06g0037 1080 NCBIfam calcium-translocating P-type ATPase, PMCA-type 145 1059 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Glsi06g0037 1080 FunFam Calcium-transporting ATPase 689 841 - -
Glsi06g0037 1080 Pfam Cation transporter/ATPase, N-terminus 146 214 IPR004014 -
Glsi06g0037 1080 Gene3D - 486 841 IPR023214 -
Glsi06g0037 1080 SFLD Haloacid Dehalogenase 471 848 - -
Glsi06g0037 1080 FunFam Calcium-transporting ATPase 57 113 - -
Glsi06g0037 1080 Coils Coil 631 651 - -
Glsi06g0037 1080 Gene3D - 499 696 IPR023299 GO:0000166
Glsi06g0037 1080 ProSitePatterns E1-E2 ATPases phosphorylation site. 491 497 IPR018303 -
Glsi06g0037 1080 Gene3D - 197 1047 - -
Glsi06g0037 1080 FunFam Calcium-transporting ATPase 244 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0037 Glsi-ChrGlsi06 399276 412227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0037 8 1073 Primary Pumps ATPases AT3G21180 74.212 0.0 1614