Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0034 ATGGATGGTATTCATGGGAATGATTCTCGGCTACAAATGAGTGATGCTCAACATCCTATGCATGTGCCATATGTGCAAGAACATGAACATCATGGGCTACACAATATGAATAATGGGAATGGGATGGATGATGATCATAATAATTGTGGTGATACTAATGGTGGTGGAAGTGAGAGCATAGAAGGAGAAGTGCCATCCAACCCTGGAAATCTTACTGACAACCATACTGCAATAATGGAGCAAGGGAGTGATGGTGGGGACCAGCTCACGTTGTCTTTTCAAGGCCAGGTTTATGTTTTCGACTCTGTGTCGCCCGAAAAGGTTCAAGCTGTGCTATTATTATTGGGTGGCCGAGAAATTCCTCCCACAATGCCTGCCATCCCAATAACCCCTCACCATAATAATCGGGGAATTTCTGGTACTCCACTAAAATTCAGCGTCCCTCAGAGGTTGGCCTCATTGATTAGATTTCGTGAGAAGCGGAAAGAACGAAATTTTGACAAAAAAATCCGTTATACTGTTCGTAAAGAAGTGGCTTTAAGGATGCAGAGAAATAAAGGTCAATTTACGTCTTCCAAGTCCAACCATGATGAATCTGCATCAGCTGCAACAAACTGGGGGACAAATGAAAACTGGACGTCAGACAACAATGGATCCCAACAGCAGGAAATTGTTTGTAGGCACTGTGGCATCAATGAGAAGTGCACACCAATGATGCGTCGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCATGTGGACTTATGTGGGCAAATAAGGGAACTCTGAGGGACCTAACAAAGTCTTCCTTGCCTGGACACAATTCTTCATTGAACAGGAATGAGGATAAGAGATTGCATTATAGGCAACATGTTTGCGATAGCTATTCTTACTTAATCCCAGTTACTTTGGTTGGAAAACAATCTTTTGCGTACCCTGCGTCAAGCTGGTTCGTGATGATTCTCTAA 969 0.4365 MDGIHGNDSRLQMSDAQHPMHVPYVQEHEHHGLHNMNNGNGMDDDHNNCGDTNGGGSESIEGEVPSNPGNLTDNHTAIMEQGSDGGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPPTMPAIPITPHHNNRGISGTPLKFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDESASAATNWGTNENWTSDNNGSQQQEIVCRHCGINEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLTKSSLPGHNSSLNRNEDKRLHYRQHVCDSYSYLIPVTLVGKQSFAYPASSWFVMIL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0034 322 Gene3D - 216 282 IPR013088 GO:0006355|GO:0008270
Glsi06g0034 322 MobiDBLite consensus disorder prediction 40 83 - -
Glsi06g0034 322 ProSitePatterns GATA-type zinc finger domain. 226 253 IPR000679 GO:0006355|GO:0043565
Glsi06g0034 322 MobiDBLite consensus disorder prediction 34 83 - -
Glsi06g0034 322 SMART GATA_3 220 273 IPR000679 GO:0006355|GO:0043565
Glsi06g0034 322 Pfam tify domain 87 116 IPR010399 -
Glsi06g0034 322 ProSiteProfiles CCT domain profile. 150 192 IPR010402 GO:0005515
Glsi06g0034 322 SMART tify_2 82 117 IPR010399 -
Glsi06g0034 322 ProSiteProfiles Tify domain profile. 82 117 IPR010399 -
Glsi06g0034 322 ProSiteProfiles GATA-type zinc finger domain profile. 220 280 IPR000679 GO:0006355|GO:0043565
Glsi06g0034 322 CDD ZnF_GATA 225 273 IPR000679 GO:0006355|GO:0043565
Glsi06g0034 322 Pfam CCT motif 150 192 IPR010402 GO:0005515
Glsi06g0034 322 Pfam GATA zinc finger 226 262 IPR000679 GO:0006355|GO:0043565
Glsi06g0034 322 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 274 - -
Glsi06g0034 322 MobiDBLite consensus disorder prediction 188 217 - -
Glsi06g0034 322 PANTHER GATA TRANSCRIPTION FACTOR 28 23 277 IPR045280 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0034 Glsi-ChrGlsi06 375191 380326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0034 1 286 Tify Gene Family AT1G51600 64.360 7.67e-135 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi06g0034 CCT 9.5e-15 CL0281