Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0023 ATGCAATTAGTATCAAATGGTAACAAGGAAGAATGTTCAGAGAGTGAACCCATCTTGAATCAGCATCGTGATTTGGAAGGATCAGGAGAATCTTCATTTTCATGTGAAATTACAGATATTGGAGGGGATTTGGCTGTTGGCAGTGATGATTTACAGAACATTCAAGTTGATGAGACTTGTTATCTGGTGAATGCAGATCAGCCACAATGCCGGATATGCCTTGATAGTGGAGGAGAAGATTTAATTGCTCCATGCCATTGCAAAGGTACCCAAAAGTATGTCCACAGGTCATGTCTTGATAATTGGAGGTCTACTAAGGAGGGGTTTGCTTTTTCTCACTGTACAGAATGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCACACGACCGATGGTGGTTGAGATTAAAATTCCAGTTCCTTGTTGCCAGGGATCATGCATTTATTTTTATAACTGTTCAGCTGGTTGTTGCATTCTTGGGGGTGCTTGTGTACAAATTTTATGGAGATGAACTGAGAGAAATGTTTGGTTACGAAGAGCATCCATATGGATTCTATACTATGGCTGTTCTAGCGATTGTTTTGGTGGGTTTGCTCTATGGCTTCTTCATAGCCATTATATGTGGCCAAAGAATCAATGAACGCCATTACCATGTTCTTGCCAAACAAGAATTGACAAAGGAGTATGTGAATGTTAGGCCTTTACTAACTGAGTCACCCTGA 723 0.4066 MQLVSNGNKEECSESEPILNQHRDLEGSGESSFSCEITDIGGDLAVGSDDLQNIQVDETCYLVNADQPQCRICLDSGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPHDRWWLRLKFQFLVARDHAFIFITVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVNVRPLLTESP 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0023 240 SMART ringv_2 69 118 IPR011016 GO:0008270
Glsi06g0023 240 CDD RING_CH-C4HC3_MARCH 70 118 - -
Glsi06g0023 240 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 190 230 - -
Glsi06g0023 240 SUPERFAMILY RING/U-box 65 121 - -
Glsi06g0023 240 Pfam RING-variant domain 70 117 IPR011016 GO:0008270
Glsi06g0023 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 122 IPR013083 -
Glsi06g0023 240 ProSiteProfiles Zinc finger RING-CH-type profile. 62 124 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0023 Glsi-ChrGlsi06 322871 326011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0023 57 216 C3H Transcription Factor Family AT1G50440 75.625 1.22e-88 260