Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0004 ATGCCCATTTTAGATGCTGACGTCACCGCGCGATGTCGGCAAATAAATATCGTTCTCCGCTTCCCAGGGTTTAAGGGTTTGAATCTGAACTGTTCCATGGCAATATGTTCTCCAATGTCCTTCAAATTCACACAAAGTTCATTTCTTCCACTTCCTGTTTTATACTCCTTCAACGTCCCTTTCCTTCTCAGTCTCTCTTCTAGGTCTGTAAGACCTACAAATCTCCATTATTTGCATCATTGTCGAAGACTTTGGCTCCGATCAATCCATCATTGTCGTCCCCTACTGGCTTCATCCTCCAGCAATTCTGAGCCAGTAGAAATTCAGGAAGCCCAGAAGGCTGTTTCAATTTTTCTCCAAGAATTTGGGGTGTCTGAGGAAGAATCCCTTTCCATAGCATCTAATTCTCCGAGGTATTTGAGGATGCTGGTTGACGGGGTTCGGGATTTGGACGAGCTTTCAATGTGGGATTCGTGGAAAGGTGATGAGAAACAAATTTGCGGGTTCCAGGAGAAGGCGGTTCACATTGCAAGGGAGAAAGGCGATAACGGCAAAGTTGCATACTTGGAGAGTCTCGGCTTGAGCCTGTCTTCGGCTATGAATGTCGCCAGGCATTTATCGGCGGAGTCACTTACAGCTCTCATTCATAAGGTTAAGTGCATGAAGGAAGTTTTCTTTTCTGGCAGTGAAAATTATGATTTCCCAGTGAAAAATGTTCGCCATATGATGATGCAGTTATCAATTCCTATTGATGAAGATTTGCAGCAGACTTTGTCCTTTTTTGAAAAGGTTGAAGCAAGGCGTGGAGGTCTAAACATGTTGAATTCCAAAGATGCTTCTTTCGGTTATCTAATTGAATCGTTTCCTCGTCTACTTTCGTTATCAGTTGACTATTACATGAAACCCTTGGTGGAAATTCTTGAGACTATTGGAATCACGAGAGGTCACATCAGAAACATTATATTGGTTTTTCCTCCCACTTTGCTGTGGAATATTGAAGTATTTAAAACTAGAGTCCTTGCCTTGAAGGAGATTGGTGTAGTAAATAAAAATTATGCCAAGGTTTTGCTAAAATATCCTTGGATTCTATCTACAAGCATTCAAGAGAATTATCAGGAGATCCTTTCTTTGTTCGATTCAGCGAAGGTTCCAAAGGCATGTATTCATCGTGCAGTCAGAAGCTGGCCTCATCTGTTGGGTTGTTCATTTACCAAGCTTAAGTTAATGGTTGATCAGTTTGGTGAACTAGGAGTTCAAAACAAGAAGTTGGGTCAGGTTATTGCTAAAAGTCCTCAGCTACTGTTACAGAAACCCCAAGACTTTCTCCAGGTTGTTCTGTTCTTTGAAAATATGGGTTTTGATAGAGAAACGATTGGTAGAATACTTGCTCGCTGCCCTGAAGTTTTTGCTGCTAGCATTAGTAAAACTCTCAAAAGGAAGATTGAGTTCCTTAGTGGTGTTGGTGTATCTGAAATTCACCTTCCTCGGGTTATTAAAAAATATCCAGAACTTCTTGTGTCTGACACTGAGAGAACTTTACTACCTCGGATTATGTACTTGAGGAAGTTGGGACTATCAGAAAAAGACATTGCATTCATGGTACGATCATTTTCTCCTCTACTTGGATACGGCATTGAGGAGGTTCTGAGACCAAAATTAGAATTCTTGGTGAACACAATGGAAAGGCCAGTAAGGGACGTGGTGGGCTACCCGAGGTATTTTAGCTATTCATTAGAAAAGAAGATAAAACCAAGATTTTGGGTGCTGAAAGGAAGGAACATTGAATATTGCTTAAAGGATATGCTTGGAAAAAATGATGAAGAATTTGCTGCTGAATTTATGGGAGTAGGAAGAATGCTTTTGCCTCTTACGTGA 1875 0.4101 MPILDADVTARCRQINIVLRFPGFKGLNLNCSMAICSPMSFKFTQSSFLPLPVLYSFNVPFLLSLSSRSVRPTNLHYLHHCRRLWLRSIHHCRPLLASSSSNSEPVEIQEAQKAVSIFLQEFGVSEEESLSIASNSPRYLRMLVDGVRDLDELSMWDSWKGDEKQICGFQEKAVHIAREKGDNGKVAYLESLGLSLSSAMNVARHLSAESLTALIHKVKCMKEVFFSGSENYDFPVKNVRHMMMQLSIPIDEDLQQTLSFFEKVEARRGGLNMLNSKDASFGYLIESFPRLLSLSVDYYMKPLVEILETIGITRGHIRNIILVFPPTLLWNIEVFKTRVLALKEIGVVNKNYAKVLLKYPWILSTSIQENYQEILSLFDSAKVPKACIHRAVRSWPHLLGCSFTKLKLMVDQFGELGVQNKKLGQVIAKSPQLLLQKPQDFLQVVLFFENMGFDRETIGRILARCPEVFAASISKTLKRKIEFLSGVGVSEIHLPRVIKKYPELLVSDTERTLLPRIMYLRKLGLSEKDIAFMVRSFSPLLGYGIEEVLRPKLEFLVNTMERPVRDVVGYPRYFSYSLEKKIKPRFWVLKGRNIEYCLKDMLGKNDEEFAAEFMGVGRMLLPLT 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0004 624 SMART mt_12 282 313 IPR003690 GO:0003690|GO:0006355
Glsi06g0004 624 SMART mt_12 459 490 IPR003690 GO:0003690|GO:0006355
Glsi06g0004 624 SMART mt_12 424 454 IPR003690 GO:0003690|GO:0006355
Glsi06g0004 624 SMART mt_12 318 348 IPR003690 GO:0003690|GO:0006355
Glsi06g0004 624 SMART mt_12 389 419 IPR003690 GO:0003690|GO:0006355
Glsi06g0004 624 SMART mt_12 564 595 IPR003690 GO:0003690|GO:0006355
Glsi06g0004 624 SMART mt_12 353 384 IPR003690 GO:0003690|GO:0006355
Glsi06g0004 624 SMART mt_12 495 526 IPR003690 GO:0003690|GO:0006355
Glsi06g0004 624 SMART mt_12 531 563 IPR003690 GO:0003690|GO:0006355
Glsi06g0004 624 Gene3D Transcription termination factor 3, mitochondrial 404 617 IPR038538 -
Glsi06g0004 624 PANTHER CGI-12 PROTEIN-RELATED 409 538 IPR003690 GO:0003690|GO:0006355
Glsi06g0004 624 FunFam Mitochondrial transcription termination factor family protein 404 617 - -
Glsi06g0004 624 Pfam mTERF 109 338 IPR003690 GO:0003690|GO:0006355
Glsi06g0004 624 Pfam mTERF 305 610 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0004 Glsi-ChrGlsi06 51768 59255 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Glsi06g0004 mTERF 1e-96 No_clan