Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g0003 ATGCTTATAAATCTTTTGCCCAACTTAGACAGAATGTGGCTTCCAAATCCAAAGGCAACAGGGATTAGAAAGGGAGGAGGAGGAAACGGGCTGGTGGCCGTTGCTATAGATAATAAGGATAAAGGCAGCCAACACGCTCTGAAATGGGCTGCTGATAGTCTTCTAACCAGAGGTCAAACTGTCATTCTAATCCACGTTTTGCACAAGACATCGTCACCTGTTTCGATAGGAGGAAGCCAAGCCGTAATATGTAACATCAACAGCCCAGCTGCATCACCGCAAAGACAAAAACTTGACAAGACTACCAAGGATCTGTTTCTTACCTTCCATTGCTATTGTACACGCAAAGATATACAATGCCTTGATGTCCTACTTGAAGACACTGATGTTGTGAAAGCAATAACAGAATTTGTCTCCTATGGTGCAATTGAGAACTTGGTGCTTGGAGCAACATCAAGGCATGGATTTATTAGATTTAAGTCATCAAATACACCAAGCGGCATATCCAAAGGGGCACCGGATTTCTGTACCGTCTATGTCATTTCTAAGGGTAAAATTTCTTCAGTTCGGAATGCTTCCCGTCCAGCCCCACATACCTCTCCATTGCTGAGCCACATACAGAATCCAAATAAACAGAATGTCGATCCACCTGAGATACCCTTTAGACGTATGAATTTGAAAGACAGGACATCAATCAAACCTCACAGCTGGCAAGATGAACCCGTTAAGTCATCATATGGAAGAGGAAGAGGCTTGAGCGGAAGGTCATATGTGGACTTTGCAGAATCAGATACAGACATATCATTTGTAAGCTCTGATAGGCCAAGCAGTGAACGTGCATCCTCTGTGTTCTATGATTATATTGACTCGGGCCAAAATTCAAGGCTTTCAACCAGTTCAGATCGCAGCTTTGGATCAGTCCGTTTGGGGCTCAAGTTCATTGAACCCAGTTCACCAGATATATCATTTTCGCAGGATAACAGTAGAACATCACTTTCATATTCATCTCAGAACATGGATGAAGCAGAAGCTGATATGAGGAGGTTGAAGCTTGAGTTAAAGCAAACTATGGATATGTACAGTACAGCATGCAGAGAAGCACTTACAGCACAACAAAAGTTAATGGAGCTGAATAACTGGAGACGTGAGGAAGAGAAAAAATTAGAAGAGGCGCGACTGGCCGAGGAAGCTGCAGTGGCAATTGCAGAGAAAGAAAAAGCAAGAAGCAAGGCCGCCATGGAAACAGCTGAAGCAGCGAAGAAAATTGCAGTGGTGGAATCACATAAAAGAGCAAGTGTTGAAATGAAAGCTCTTAAAGAAGCAAAGGAAATGAGAAAGCTATTAGATAACCTAGCCCAAACTGATGTAAGATATAGGAGATACACTATTGATGAGATCGAAGTAGCAACGGACTACTTTTCTGAATTTCGGAAAATTGGAGAAGGAGGTTATGGCCCTGTATATAAATGTTACCTTGATCACACACCAGTAGCAGTCAAGGTTCTACGTCCAGATGCTGCTCAAGGGAAGTCACAGTTTCAGCAAGAGGTTGACATACTCAGCTGCATACGCCATCCCAACATGGTACTTCTTCTAGGAGCCTGTCCAGAGTACGGCATACTTGTTTATGAATATATGGCTAATGGAAGCTTAGAAGATTGTCTGTTTCGAAAAACAAACGGTCGTGTTTTGTCTTGGCAGCTCAGGTTCCGAATTGCTGCAGAAATAGCCACTGGCCTACTCTTTCTCCATCAGACCAAGCCTGAACCTTTAGTGCACCGTGATCTGAAACCTGGCAACATTTTGCTAGACAATAATTATGTAAGTAAAATTAGCGATGTTGGATTGGCCAGGCTGGTCCCTGTTGTTGCTGAAAATGTAACACAATGCCGCATGACATCAGCCGCTGGAACTTTCTGTTACATTGATCCAGAGTATCAGCAAACAGGAATGCTTGGCGTCAAGTCTGATGTTTATTCTCTAGGGATTATGCTTCTACAATTGGTAACAGGAAAGCCTCCAATGGGCTTGGCTCACCATGTTGAACAGTCTATTGACAACGGCACATTTGCGGACATGCTGGACCCATCTGTGCCCGAGTGGCCAATTGAAGAAGCCTCATGCTTCGCAAAGCTAGCAGTTAAGTGTGCAGAACTTAGACGAAAAGATCGACCAGACCTTGGCAAAGTAGTATTGCCAGAGCTCAATAAATTGAGAGAGTTTGCTGAAGAAAAGACGAGTAACATCTTGTTAGGTGCCAATACTGCGCCGTCCCTCAACCACAGTCAAGCTTCCGTGCAACAGGAGGTGATGAGTGACCCACGGCTTGTCCATTCAGGAAGCTCTAGAAGCCCATCAAGCCCATCAACGCCGACATAA 2379 0.4401 MLINLLPNLDRMWLPNPKATGIRKGGGGNGLVAVAIDNKDKGSQHALKWAADSLLTRGQTVILIHVLHKTSSPVSIGGSQAVICNINSPAASPQRQKLDKTTKDLFLTFHCYCTRKDIQCLDVLLEDTDVVKAITEFVSYGAIENLVLGATSRHGFIRFKSSNTPSGISKGAPDFCTVYVISKGKISSVRNASRPAPHTSPLLSHIQNPNKQNVDPPEIPFRRMNLKDRTSIKPHSWQDEPVKSSYGRGRGLSGRSYVDFAESDTDISFVSSDRPSSERASSVFYDYIDSGQNSRLSTSSDRSFGSVRLGLKFIEPSSPDISFSQDNSRTSLSYSSQNMDEAEADMRRLKLELKQTMDMYSTACREALTAQQKLMELNNWRREEEKKLEEARLAEEAAVAIAEKEKARSKAAMETAEAAKKIAVVESHKRASVEMKALKEAKEMRKLLDNLAQTDVRYRRYTIDEIEVATDYFSEFRKIGEGGYGPVYKCYLDHTPVAVKVLRPDAAQGKSQFQQEVDILSCIRHPNMVLLLGACPEYGILVYEYMANGSLEDCLFRKTNGRVLSWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDNNYVSKISDVGLARLVPVVAENVTQCRMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIMLLQLVTGKPPMGLAHHVEQSIDNGTFADMLDPSVPEWPIEEASCFAKLAVKCAELRRKDRPDLGKVVLPELNKLREFAEEKTSNILLGANTAPSLNHSQASVQQEVMSDPRLVHSGSSRSPSSPSTPT 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g0003 792 Gene3D Transferase(Phosphotransferase) domain 1 546 756 - -
Glsi06g0003 792 PANTHER OS02G0152300 PROTEIN 32 780 - -
Glsi06g0003 792 MobiDBLite consensus disorder prediction 760 792 - -
Glsi06g0003 792 SUPERFAMILY Protein kinase-like (PK-like) 456 731 IPR011009 -
Glsi06g0003 792 MobiDBLite consensus disorder prediction 190 214 - -
Glsi06g0003 792 ProSiteProfiles Protein kinase domain profile. 473 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0003 792 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 445 545 - -
Glsi06g0003 792 FunFam U-box domain-containing protein 51 546 745 - -
Glsi06g0003 792 MobiDBLite consensus disorder prediction 190 220 - -
Glsi06g0003 792 Coils Coil 374 419 - -
Glsi06g0003 792 Gene3D Phosphorylase Kinase; domain 1 451 545 - -
Glsi06g0003 792 MobiDBLite consensus disorder prediction 230 249 - -
Glsi06g0003 792 MobiDBLite consensus disorder prediction 320 339 - -
Glsi06g0003 792 Pfam Protein kinase domain 474 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0003 792 CDD STK_N 31 184 - -
Glsi06g0003 792 Pfam Universal stress protein family 32 168 IPR006016 -
Glsi06g0003 792 Coils Coil 332 359 - -
Glsi06g0003 792 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 33 181 - -
Glsi06g0003 792 SMART serkin_6 473 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g0003 792 Gene3D HUPs 31 181 IPR014729 -
Glsi06g0003 792 ProSitePatterns Serine/Threonine protein kinases active-site signature. 591 603 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g0003 Glsi-ChrGlsi06 27647 38028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g0003 12 766 Receptor kinase-like Gene Family AT1G78940 60.207 0.0 859
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Glsi06g0003 Pkinase 1.7e-42 CL0016