Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2260 ATGATTTCATCAAATGCATCGGCCCTCAGGTCTTCCAAGAAATTGTATGAGGATAATGAATATGCTCTTTATACTGTAGCACTCTTTAGTCGTGTTGCAGACAACTTTAGAACAAGTGCGCGTGAAAAAGGATTCCAAATTCGTGACTTGGAATACAGTGCAGAATCACGAGTGTTAGAAGGAGGAGTTAGAGATATTGATTCGAGATCAGGAAAGTCTGAGAGGTTCTCTGTTGTACGTAGTGTTGTTATATCAATTATGGAGAGTTGCTTGAAGTATCTAGCTCGGGTAGTATGCCCAACCTATGGCTCAGCCAAACCTTATGACTAA 330 0.4061 MISSNASALRSSKKLYEDNEYALYTVALFSRVADNFRTSAREKGFQIRDLEYSAESRVLEGGVRDIDSRSGKSERFSVVRSVVISIMESCLKYLARVVCPTYGSAKPYD 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2260 109 SUPERFAMILY Vacuolar ATP synthase subunit C 10 73 IPR036132 GO:0015078|GO:0033180|GO:1902600
Glsi05g2260 109 Gene3D - 8 61 - -
Glsi05g2260 109 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 10 56 IPR004907 GO:0033180|GO:0046961|GO:1902600
Glsi05g2260 109 Pfam V-ATPase subunit C 10 57 IPR004907 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2260 Glsi-ChrGlsi05 68735846 68737445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2260 10 57 Primary Pumps ATPases(2) AT1G12840 77.083 1.26e-20 83.2