Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2238 ATGGGAGGGAATCGCAGCAATTATTCTGCCAATCCCGCCGACTACAAGCTTCTGGAAGAAGTTGGTTATGGTGCCAGCGCCACCGTTTACCGTGCGATCTATCTTCCTCTCAATGAAGTCGTCGCTGTTAAGTGCTTGGATCTTGATCGCTTCAATTGTAATCTGGACGACATACGTAGGGAGGCTCAAACTATGAGTTTGATAGATCACCCTAATGTTGTGAGGGCATATTGTTCATTTGTTGTTGAACGAGACCTTTGGGTGGTGATGCCATTCATGGATGAAGGTTCTTGTTTGCACCTCATGAAGATAGCATATCCTGACGGATTTGAAGAGGCATCTATTGGATCTATTCTAAAAGAAACCCTCAAGGCATTGGAGTATCTTCATCAACAAGGGCATATTCATCGTGATGTTAAGGCTGGAAACATTTTGCTTGATAGTAACGGGGTTGTAAAGCTAGCTGATTTTGGTGTTTCAGCTTGCTTGTTTGATACAGGTGATAGACAACGTTCAAGAAATACTTTCGTGGGGACTCCTTGCTGGATGGCTCCAGAGGTACTGCAGCCTGGAAGTGGTTACAATTCCAAGGCTGATATTTGGTCCTTTGGAATTACAGCACTGGAGTTGGCTCATGGTCATGCACCTTTTTCAAAATATCCTCCAATGAAGGTTCTTCTAATGACCATACAGAATGCCCCTCCGGGACTTGATTATGATCGTGATAAAAAGTTCTCTAAGTCTTTTAAGGAAATGGTTGCTATGTGCTTGGTCAAAGATCAAACAAAGAGGCCATCAGCGGAGAAGCTATTGAAACACTCCTTCTTTAAATTTGCCAAGCCTCCTGAGCTTTCTGTGAAGAAATTATTTGCTGACTTACCACCTCTTTGGAATCGTGTAAAAGCTATCCAGCTTAAAGATGCAACTCAACTAGCTCTGAAGAAAATGCCTTCTGCAGAACAAGAAGCAATATCACAGAGTGAATACCAGCGAGGAGTTAGTGCATGGAACTTTGATATTGATGATTTGAAAGCTCAAGCTTCATTGGTAAGGGACGATGATGATATCGTAGAGATGACGGAAGAGGATGAAAACAAATTCTTTACCAATTATAAGGATGCAATTGATTCCCAGTCTGGCATGAGGAAAAAGAATTCAGACAAATTACCTCAGGATGAGTTCACATCACTGGTATATAGTAATGACATGAAACAGAGTGAGTGCTTGAACAAAAAGGGGAAGACTCTTGAAGGTGATCAGCAGGAACTTGAATGCCCCAAAAATATTATTTGGAAAAGAAATGGACCAATCATTGAGGCAACAGCATCCACCTCAGAGAAGGATGTGACAAGCAAGATTAAAACTCAATCAGTGAAAAGTCGGCAAACCCAGAGTGGGCCACTGGTGCCAGGAACTGTGATTGGTCATTCTTTATCAGAAAGAGGGCGTACATCGGAAAGGTTTGAGAATGAAAATCAGCCATCAGGTGAGAAAAGTAATCGTGAAGTACGACGAGCTCCAAGCTTTAGTGGTCCATTGATGCTTCCAAACAGAGCTTCGGCAAATAGCTTATCAGCTCCAATAAAATGTTCTGGAGGATTCAGAGATTCCTTGGATGAAAAATCTAAAGCTAATCTTGTGCAAATTAAAGGGCGATTCTCAGTAACATCAGAAAATTTAGATCTTGTGAAGGATATTCCTATAAGTTCAGTTCAACGGCGGTCTTCACAGGGATCACCACTGAGGAAATCGGCAAGTGTTGGTGATTGGATGTTGGATTCTAAACAAATGTCATCCAATGATTCTGCCAATACCAATATTCCCACATCACTCCTTCTGCCTCACCTTCAGAATCTTTTCCAGCAGACTTCCATTCAACAGGATCTAATAATAAATGTGTTGAATAGCTTGCAACCTGCTGAGGCAGTTGATGCTTCTTTGAATGGAAAGTTGCCACCACCACAACCTCGCAGTTCAGAGAACAACGGAAATGTTGATTCAGCAGCTTCAGATAGGGAACGTCTGCTGCTTGTTAAAATTGCGGAACTTCAGGCCAGGATGATCAATTTGACGGAGGAACTGACTGCTGAGAAGTTGAAACAGATGCAGTTGCAACAACAGCTAACAGCTCTCTCCAGTCAGGAACAACATGGGGATAGAAGAGAGGAAGTCGCATGA 2178 0.4242 MGGNRSNYSANPADYKLLEEVGYGASATVYRAIYLPLNEVVAVKCLDLDRFNCNLDDIRREAQTMSLIDHPNVVRAYCSFVVERDLWVVMPFMDEGSCLHLMKIAYPDGFEEASIGSILKETLKALEYLHQQGHIHRDVKAGNILLDSNGVVKLADFGVSACLFDTGDRQRSRNTFVGTPCWMAPEVLQPGSGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPSAEKLLKHSFFKFAKPPELSVKKLFADLPPLWNRVKAIQLKDATQLALKKMPSAEQEAISQSEYQRGVSAWNFDIDDLKAQASLVRDDDDIVEMTEEDENKFFTNYKDAIDSQSGMRKKNSDKLPQDEFTSLVYSNDMKQSECLNKKGKTLEGDQQELECPKNIIWKRNGPIIEATASTSEKDVTSKIKTQSVKSRQTQSGPLVPGTVIGHSLSERGRTSERFENENQPSGEKSNREVRRAPSFSGPLMLPNRASANSLSAPIKCSGGFRDSLDEKSKANLVQIKGRFSVTSENLDLVKDIPISSVQRRSSQGSPLRKSASVGDWMLDSKQMSSNDSANTNIPTSLLLPHLQNLFQQTSIQQDLIINVLNSLQPAEAVDASLNGKLPPPQPRSSENNGNVDSAASDRERLLLVKIAELQARMINLTEELTAEKLKQMQLQQQLTALSSQEQHGDRREEVA 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2238 725 MobiDBLite consensus disorder prediction 652 668 - -
Glsi05g2238 725 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Glsi05g2238 725 Pfam Protein kinase domain 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g2238 725 Coils Coil 680 707 - -
Glsi05g2238 725 SUPERFAMILY Protein kinase-like (PK-like) 14 330 IPR011009 -
Glsi05g2238 725 MobiDBLite consensus disorder prediction 442 470 - -
Glsi05g2238 725 FunFam Serine/threonine-protein kinase BLUS1 4 92 - -
Glsi05g2238 725 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 7 698 IPR047173 GO:0043539
Glsi05g2238 725 ProSiteProfiles Protein kinase domain profile. 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g2238 725 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Glsi05g2238 725 CDD STKc_OSR1_SPAK 14 276 - -
Glsi05g2238 725 MobiDBLite consensus disorder prediction 480 504 - -
Glsi05g2238 725 MobiDBLite consensus disorder prediction 442 518 - -
Glsi05g2238 725 FunFam serine/threonine-protein kinase BLUS1-like isoform X2 96 326 - -
Glsi05g2238 725 MobiDBLite consensus disorder prediction 645 668 - -
Glsi05g2238 725 Gene3D Transferase(Phosphotransferase) domain 1 96 327 - -
Glsi05g2238 725 SMART serkin_6 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2238 Glsi-ChrGlsi05 68523821 68531328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2238 8 716 MAP Kinase Kinase Kinase Kinase AT4G10730 65.260 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Glsi05g2238 Pkinase 2.2e-60 CL0016