Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2228 ATGTCTGCTTCGCATACCGCAGACTCTTCATTTGCCTGCCCTTTGGATCCAGGCCTTCTCAAGCCATCTACTCTTCTTGTCTCCTTTCTCGAACGCCTGCAAGAAACCGCACTCAACACCTACGGCAAATCTAACTTCGATCCAAAAACATACGTTGACTTGCCATTGAAGTTCAATTTGTCTGTGACAGAGGAGGCTTTTTCTAAACTTCCTAGGTCTGCTCATGGGTCAGTGGCGGTTAAGGACTTGAATTATTTTATAGAAACATACTTGGATGGTGCCGGTGATGATGTGGAATATTTCGAACCAGAGGATTTTGTTCCAGAGCCAGAGGGTTTCTTGCCCAAGGTCCAGCATCCTGATGTGAGGGCCTGGGCACTAAAGGTCCATTCCCTTTGGAAAAACTTGAGTCGCAAAATATCCGGTGGGGTCAAAAGGCACCCCCAATTGCATACTCTGCTTCCTTTGCCGGCTTCTTTCGTCATTCCGGGTTCACGTTTTCGTGAGGTCTATTACTGGGATTCCTACTGGGTAATTAGGGGCTTGCTAGTGAGTAAAATGTATGGAACAGCTAAAGCAATTGTCACTAATCTTATTTCTCTCGTAGAAAAATATGGATTTGTGCTTAATGGTGCTAGAGCCTACTACACCAACAGGAGTCAGCCTCCCTTTTTAAGCGCTATGATTTATGAGATATACAATAGCACTGGTGATATAGAATTGGTTAAAAGATCTCTACCTGCACTAAGGAAAGAGTATGAGTTTTGGAATTCAGAAATACATAGGGTGACCATCGTGGATTCTCAAGGTTGCACTCACACCTTAAATCGTTATTATGCAATGTGGAATGAACCCAGGCCAGAATCTTCAGTAATGGACAAGGCATTTGCTTCCAAGATTTTGATTGTTTCAGAAAAACAGCGTTTTTATCGTGAACTGGCTTCAACCGCTGAATCAGGATGGGATTTTAGTACAAGATGGATGAGAGATCCATCGGATTTTACAACATTGGCTACCACATCTGTAATCCCTGTTGATCTAAATGCATATATGCTTGGGATGGAACTTAATATTGCCTTCTTTGCAAAAGTTACCGGAGATAATAGCACTGCTGAGCAGTTCCTGGTATTTTCTGATCAAAGAAAGAAGGCGATGAACTCTGTTTTCTGGAATGCAAACATGAAACAATGGCTTGATTACTGGCTCAGCAATAGCAGATGTGAGGAAGCTGAGGTTTGGGAAGCTCAGCAGCAGAATCAAAACGTATTTGCTTCCAATTTTATTCCTTTGTGGATGGAACCATTTTACTCAGATGCTTCGCATGTGGGTAGAGTTGTTGACAGTCTCAAAAATTCTGGCCTGCTTTGTGCTGCTGGAGTTGCAACTTCTTTGACCAACTCTGGACAACAGTGGGATTTCCCTAATGGTTGGGCCCCACTTCAACACATGCTAGTTGAAGGTCTTGTAAAATCTGGGTTGGAAGAAGCAAGTTCATTGGCTGAAGAAATTGCTATCAGATGGATCACAACCAACTATATAGCTTACAAGAAATCGGGTTTAATGCATGAAAAATATGACGTGGAGCATTGTGGAAAATTTGGTGGTGGGGGTGAATATATACCCCAGACTGGTTTTGGCTGGTCGAATGGAGTTGTGCTGGCATTGCTGGAGGAGTTTGGATGGCCTCGAGATCGGAATATAGATTGCTGA 1710 0.4316 MSASHTADSSFACPLDPGLLKPSTLLVSFLERLQETALNTYGKSNFDPKTYVDLPLKFNLSVTEEAFSKLPRSAHGSVAVKDLNYFIETYLDGAGDDVEYFEPEDFVPEPEGFLPKVQHPDVRAWALKVHSLWKNLSRKISGGVKRHPQLHTLLPLPASFVIPGSRFREVYYWDSYWVIRGLLVSKMYGTAKAIVTNLISLVEKYGFVLNGARAYYTNRSQPPFLSAMIYEIYNSTGDIELVKRSLPALRKEYEFWNSEIHRVTIVDSQGCTHTLNRYYAMWNEPRPESSVMDKAFASKILIVSEKQRFYRELASTAESGWDFSTRWMRDPSDFTTLATTSVIPVDLNAYMLGMELNIAFFAKVTGDNSTAEQFLVFSDQRKKAMNSVFWNANMKQWLDYWLSNSRCEEAEVWEAQQQNQNVFASNFIPLWMEPFYSDASHVGRVVDSLKNSGLLCAAGVATSLTNSGQQWDFPNGWAPLQHMLVEGLVKSGLEEASSLAEEIAIRWITTNYIAYKKSGLMHEKYDVEHCGKFGGGGEYIPQTGFGWSNGVVLALLEEFGWPRDRNIDC 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2228 569 SUPERFAMILY Six-hairpin glycosidases 41 562 IPR008928 GO:0005975
Glsi05g2228 569 ProSitePatterns Trehalase signature 2. 470 479 IPR018232 GO:0004555|GO:0005991
Glsi05g2228 569 PANTHER TREHALASE 29 566 IPR001661 GO:0004555|GO:0005991
Glsi05g2228 569 Gene3D - 33 567 IPR012341 GO:0005975
Glsi05g2228 569 Coils Coil 567 569 - -
Glsi05g2228 569 PRINTS Glycosyl hydrolase family 37 signature 385 401 IPR001661 GO:0004555|GO:0005991
Glsi05g2228 569 PRINTS Glycosyl hydrolase family 37 signature 543 556 IPR001661 GO:0004555|GO:0005991
Glsi05g2228 569 PRINTS Glycosyl hydrolase family 37 signature 310 327 IPR001661 GO:0004555|GO:0005991
Glsi05g2228 569 PRINTS Glycosyl hydrolase family 37 signature 342 359 IPR001661 GO:0004555|GO:0005991
Glsi05g2228 569 PRINTS Glycosyl hydrolase family 37 signature 275 292 IPR001661 GO:0004555|GO:0005991
Glsi05g2228 569 PRINTS Glycosyl hydrolase family 37 signature 463 479 IPR001661 GO:0004555|GO:0005991
Glsi05g2228 569 PRINTS Glycosyl hydrolase family 37 signature 205 223 IPR001661 GO:0004555|GO:0005991
Glsi05g2228 569 Pfam Trehalase 44 560 IPR001661 GO:0004555|GO:0005991
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2228 16 569 Trehalose Biosynthesis Gene Families AT4G24040 58.781 0.0 667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g2228 05 68458704 68467784 Glsi05g2228 05 68458704 68467784 ECH