Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2226 ATGTGCAAAGCCCAAAACGAAGAGGGAGATTTAGTGGGGAAAAAAAAAAAACGAAACAAAAACAAAACACGGAGGGAGAGAGCCGAGTCGCTCAGACGCTTACTGTCTCCTCCACAGCCATCGGGAACCATACCTGAATCGCCGAAGATGACAGAAGTTGCGAGCTCAGTGGTGCACGAGGTCCTGGGACGACGGGTTCAGGATGTGGATCAGCCAATTATTGATTACATTATCAACGTCCTCGCAGACGAGGACTTTGATTTTGGAGTTGATGGAGAAGGCGCCTTCGAATTTCTCGGAGAGTTACTCGTTGGTGCCGGCTGCGTCGACGACTTCTCCGAGTGTCGCTCTGTGTGCAGCAAATTGTCTGAAAAATTTGGAAAGCACGGGTTGGGCAAAGCCAAACCAACCGTGCGAAGCCTTGCAGCACCTTTTAGAATGAACGACGGAATGGATGATGAGGAAACTCCCAAGAAGAAGCCTGAGGCTATAGATGGTCCTCTTCTATCTGAACGTGACCGAGCAAAGCTAGAAAGGAGAAAGAGGAAGGATGAACGCCAAAGGGAGGTACAGTATCAAATGCATTTAGCGGAAATGGAAGCAGCCCGAGAAGGGATGCCTGTTGCTTGTGTTAGGCATGATAATAGTGGTGGAGCAGCTGTCAAGGACATTCACATGGAGAACTTCAATATTTCTGTTGGTGGCCGTGATCTCATTGTGGATGGTTCTATCACACTTTCATTTGGAAGGCATTATGGCCTTGTTGGAAGAAATGGTACTGGGAAAACAACTTTCCTCAGGCACATGGCTATGCATGCCATTGATGGTATTCCAAATAATTGTCAGATATTGCATGTGGAACAAGAGGTGGCTGGTGATGATATAACGGCGTTGCAGTGTGTTCTCAATTCTGATATTGAGAGGACTCAACTTCTGGAGGAAGAAGCTCGTTTACTTGCCCAACAGAGAGAGTTGGAGACTGAGGATGTTCATGGAAAGAGCAATGGTGATCTGAAAGGGACCGTTGACAGAGATGCTATTTCACAAAGACTTCAGGGAATATACAAGAGGCTTGAGTTAATTGATGCAGATTCTGCAGAGTCACGTGCAGCATCAATACTTGCAGGCCTAAGCTTCACTCCTGAGATGCAAAAGAAGGCAACAAAAACTTTTTCTGGAGGATGGCGGATGCGAATAGCTCTTGCTCGTGCATTATTTATAGAGCCTGATTTGTTGCTTCTTGATGAACCTACGAACCATCTTGATCTTCATGCTGTCTTATGGCTGGAATCTTACCTGGTTAAGTGGCCAAAAACGTTTATAGTTGTTTCTCATGCTAGAGAGTTTTTGAACACGGTGGTTACTGACATAATTCACCTACAAAGCCAAAAGCTGACCAATTATAAAGGGAATTATGATACTTTCGAGAAGACTCGAGAAGAACAGCTTAAAAACCAGCAAAAAGCATTAGAGGCAAATGAACGCTCAAGAGCTCACATGCAGTCTTTCATTGACAAGTTCCGCTATAATGCCAAGAGGGCATCACTTGTTCAATCAAGAATCAAGGCTTTGGACAGGATGGGTCATGTGGATGAAATTGTCAACGATCCTGACTACAAGTTTGAGTTCCCAACTCCAGATGATAGACCCGGTGCACCAATAATAAGTTTCAGTGATGCATCGTTTGGTTATCCCGGTGGGCCCATTCTATTTAAGAATTTGAATTTTGGGATTGATCTTGACAGCCGTATTGCAATGGTTGGACCAAATGGCATAGGTAAATCAACTATACTTAAGTTAATTGCAGGGGAACTACAGCCCAGTTCTGGGACAGTTTTCCGTTCTGCCAAGGTTCGCATAGCGGTGTTCAGTCAGCATCATGTCGATGGACTAGACTTATCTTCAAATCCTCTTTTATATATGATGCGCTGCTACCCTGGCGTTCCTGAACAGAAACTTCGAGCTCACTTGGGTTCCTTTGGTGTAACTGGAAATCTTGCACTTCAGCCAATGTATACTCTGTCAGGTGGCCAAAAAAGCAGGGTTGCATTTGCAAAGATAACTTTCAAGAAACCACATATAATATTGCTTGATGAACCATCCAATCATCTGGACTTGGATGCTGTTGAGGCGCTAATTCAAGGTCTCGTAATGTTTCAAGGAGGCATTCTAATGGTGAGTCACGATGAGCACCTCATATCTGGAAGCGTGGAGGACCTATGGGCTGTATCTCAAGGGAAAGTGATCCCATTCCAGGGCACCTTCCAAGATTATAAGAAGATACTCCAGTCATCATAG 2298 0.4478 MCKAQNEEGDLVGKKKKRNKNKTRRERAESLRRLLSPPQPSGTIPESPKMTEVASSVVHEVLGRRVQDVDQPIIDYIINVLADEDFDFGVDGEGAFEFLGELLVGAGCVDDFSECRSVCSKLSEKFGKHGLGKAKPTVRSLAAPFRMNDGMDDEETPKKKPEAIDGPLLSERDRAKLERRKRKDERQREVQYQMHLAEMEAAREGMPVACVRHDNSGGAAVKDIHMENFNISVGGRDLIVDGSITLSFGRHYGLVGRNGTGKTTFLRHMAMHAIDGIPNNCQILHVEQEVAGDDITALQCVLNSDIERTQLLEEEARLLAQQRELETEDVHGKSNGDLKGTVDRDAISQRLQGIYKRLELIDADSAESRAASILAGLSFTPEMQKKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDIIHLQSQKLTNYKGNYDTFEKTREEQLKNQQKALEANERSRAHMQSFIDKFRYNAKRASLVQSRIKALDRMGHVDEIVNDPDYKFEFPTPDDRPGAPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVMFQGGILMVSHDEHLISGSVEDLWAVSQGKVIPFQGTFQDYKKILQSS 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2226 765 Pfam ABC transporter 572 702 IPR003439 GO:0005524
Glsi05g2226 765 ProSitePatterns ABC transporters family signature. 674 688 IPR017871 GO:0005524|GO:0016887
Glsi05g2226 765 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 224 487 IPR003439 GO:0005524
Glsi05g2226 765 FunFam ABC transporter F family member 3 176 500 - -
Glsi05g2226 765 CDD ABCF_EF-3 224 464 - -
Glsi05g2226 765 ProSitePatterns ABC transporters family signature. 391 405 IPR017871 GO:0005524|GO:0016887
Glsi05g2226 765 MobiDBLite consensus disorder prediction 148 188 - -
Glsi05g2226 765 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 555 764 IPR003439 GO:0005524
Glsi05g2226 765 FunFam ATP-binding cassette sub-family F member 3 517 765 - -
Glsi05g2226 765 Coils Coil 308 328 - -
Glsi05g2226 765 SMART AAA_5 248 465 IPR003593 GO:0016887
Glsi05g2226 765 SMART AAA_5 580 747 IPR003593 GO:0016887
Glsi05g2226 765 CDD ABCF_EF-3 555 747 - -
Glsi05g2226 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 489 IPR027417 -
Glsi05g2226 765 MobiDBLite consensus disorder prediction 1 50 - -
Glsi05g2226 765 MobiDBLite consensus disorder prediction 147 188 - -
Glsi05g2226 765 Gene3D - 177 500 IPR027417 -
Glsi05g2226 765 Gene3D - 518 765 IPR027417 -
Glsi05g2226 765 Pfam ABC transporter 458 538 IPR032781 -
Glsi05g2226 765 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 204 764 - -
Glsi05g2226 765 Pfam ABC transporter 243 419 IPR003439 GO:0005524
Glsi05g2226 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 536 757 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2226 Glsi-ChrGlsi05 68438672 68448132 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2226 517 716 Calmodulin-binding Proteins AT2G36910 26.724 2.02e-10 62.8