Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2218 ATGAATGTGATGAGAATAGTCATGGGTGTTCCGCAGACTCCAACCACTTCTCCGAATTTGTATCCGCAAGAGCTTCAGCTTAAACTTTACCAGGCCTTCATATTCTCCATCCCCATACTCTTTTCCATTATTCTCTTTCTCTTGTTTTACTTGTTCTACCTCAAGAGGAGGGCTTCCTCTCTCTCAACCGCTCCTGTCATCCTTCCCACCGCACCATCTACCTATTATTCCTCTTCTTGTCGTTTGGATCTCACCCCACAATTCCTTCACACACTTCCCAAAGTTTTATTTGATGAGGATTTGGAAGCAAGAGATTCACAATGTTGTGTTTGTCTGGGAGAATTTGAGATGAAAGAAGAGGTGCTACAGATCCCCTATTGCAAGCATGTATTTCACAGGGATTGCATATATCACTGGTTGCAGACACATTCCACCTGTCCACTTTGTAGATGTTGTATCATCCAAAACAGCAAGCTTCTTAATCCACTACCCCAACCACAAGATCATCATTCTGGTTCAGGGGAATAG 528 0.4318 MNVMRIVMGVPQTPTTSPNLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSTAPVILPTAPSTYYSSSCRLDLTPQFLHTLPKVLFDEDLEARDSQCCVCLGEFEMKEEVLQIPYCKHVFHRDCIYHWLQTHSTCPLCRCCIIQNSKLLNPLPQPQDHHSGSGE 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2218 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 154 IPR013083 -
Glsi05g2218 175 SUPERFAMILY RING/U-box 87 156 - -
Glsi05g2218 175 Pfam Ring finger domain 107 150 IPR001841 -
Glsi05g2218 175 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 162 - -
Glsi05g2218 175 SMART ring_2 108 149 IPR001841 -
Glsi05g2218 175 CDD RING-H2_EL5-like 107 150 - -
Glsi05g2218 175 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2218 Glsi-ChrGlsi05 68366421 68367588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2218 15 154 C3H Transcription Factor Family AT4G10150 39.583 2.03e-33 117