Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2217 ATGTTGAATCGCGGAGGGTCTTTTTCGTTGTCTTCGGCCGAAGGTGGTGGTGGAGGTGATGATCTGTATGAAGAACTATGGAAGGCTTGTGCGGGACCTCTTGTCGACGTTCCTCGGGCCGGCGAGAGGGTGTTCTATTTTCCACAAGGACACATGGAGCAATTAGAGGCATCAACAAATCAAGAACTAAATCATAGGATTCCGGTATTCAACCTTCCCCCAAAGATCCTTTGTCGCGTGGTGAACGTCCATTTACTGGCTGAACAAGAAACAGACGAGGTTTATGCACAAATTACTCTGGTGCCGGAATCAAATCAAACTGAGCCTATAAGCCCTGATCCATGCCCTGCTGAACTTCCAAGGCCAACTATTCACTCATTCTGCAAGGTCTTAACGGCATCTGATACAAGCACCCATGGTGGGTTCTCTGTTCTCAGGAAACACGCCACTGAATGCCTTCCTCCTTTGGACATGTCCCAATCAACTCCGACTCAGGAATTGGTTGCCAAAGATCTGCATGGCTATGAGTGGCGCTTTAAGCATATATTCAGAGGTCAACCACGTCGACACTTGCTCACAACTGGATGGAGCACTTTTGTTACTTCCAAGAGATTAGTTGCTGGAGATACCTTTGTGTTTTTAAGAGGGGTCAATGGAGAATTACGCGTTGGAGTAAGGCGTCTTGCTTGTCAGCAGAGCAGCATGCCATCATCTGTGATTTCCAGTCAGAGCATGCACCTAGGAGTTCTTGCAACTGCTTCTCATGCTGTTGCAACCCAAACCCTTTTTGTAGTATACTATAAGCCGAGGACCAGCCAGTTCATCATAAGCGTAAACAAGTATTTAGAGGCTATCAACAATAAGTTTACTGTTGGTATGAGGTTCAAGATGAGGTTTGAAGGGGATGAGTCTCCTGAGACTGACAAGAGATTTTCAGGCACAATAATTGGGTTGGAAGATATTTCTCCTCACTGGGAAAATTCAAAATGGCGGTCACTCAAGGTTCAATGGGATGAACCTGCAGCTGTTCCAAGACCTGATAGGGTTTCACCATGGGAAGTAGAACCCTTTCTGGTTTCTGTTACTGCATCTTCCGTTCAACCTACTGTTGTAAAGACTAAGAGACCTCGACCACCCAGTGAACTTCCAGATCTTGACACAAGTTCCACTGCCTCTGCTTTCTGGAATTCTGAGCTGATGCAGCCAGATATAACACAACTCAGTGGTATGAATGAAAGCAAAAGAAGTGACTATTCTGGCATGTGGCATCATAGTCAAACTGATGTGAACAGTAAAAGCAACAGCAACACGATGTCAAAGAATCAAACAGAAGGCACTTGGTTGTCGTCTCCTAATTCTAGTGGTCCTCAGCATTTGTTTCAGGACACGACAGATGATAGCAAGAGTGTCTCTGCTTGGCCTGTTCACTCTGTTCATCCAACATCTCAATCATCAAGATTGAACAATGATCATTCTATTGACCGTGCTGGCAAGGAGAATAAAGTTGAGACTGCTACAAGCTGTCGATTGTTTGGAATTGAGCTTATTGGTCGTTCCCAAAACTCACCTGCTTTGGGGAAGGCACCTGCACCTGCAGTAAGCGTACCCAATGGCTCTTCTGAAAGTCGTGTTAGTACCATGACTGGAACTGATTCAGACCGCAAGTCTGATATCTCAAAGGCTTCCCAGGAGGGGAAACAAGAACAGCTGCAAGTATCACCAAAGGAGACTCAGAGCAAGCAAATTTGTTCCAGAAGTCGCACCAAGGGGGTTGCAGTGGGTCGTGCGGTGGACTTGACCATGTTGGATGGGTATGATCAACTTATAGATGAATTGGAGGAAATGTTTGACATAAAGGGACAACTTCAACTTAGGAAGAACTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTGGGTGATGATCCATGGCCTGAATTTTGTAATATGGTCAGAAGAATCTTCATTTGTTCCAGCCTGGATGTTAAGAAGATGAGTGTAGGAAGCGAACTGCCTATTTCTTCGATAGAAGGTGAAGGGATTGTAATAAACACGGAAAGAGCTGAAACCTGA 2082 0.4529 MLNRGGSFSLSSAEGGGGGDDLYEELWKACAGPLVDVPRAGERVFYFPQGHMEQLEASTNQELNHRIPVFNLPPKILCRVVNVHLLAEQETDEVYAQITLVPESNQTEPISPDPCPAELPRPTIHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMSQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGVNGELRVGVRRLACQQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIISVNKYLEAINNKFTVGMRFKMRFEGDESPETDKRFSGTIIGLEDISPHWENSKWRSLKVQWDEPAAVPRPDRVSPWEVEPFLVSVTASSVQPTVVKTKRPRPPSELPDLDTSSTASAFWNSELMQPDITQLSGMNESKRSDYSGMWHHSQTDVNSKSNSNTMSKNQTEGTWLSSPNSSGPQHLFQDTTDDSKSVSAWPVHSVHPTSQSSRLNNDHSIDRAGKENKVETATSCRLFGIELIGRSQNSPALGKAPAPAVSVPNGSSESRVSTMTGTDSDRKSDISKASQEGKQEQLQVSPKETQSKQICSRSRTKGVAVGRAVDLTMLDGYDQLIDELEEMFDIKGQLQLRKNWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSLDVKKMSVGSELPISSIEGEGIVINTERAET 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2217 693 Pfam Auxin response factor 253 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi05g2217 693 SUPERFAMILY DNA-binding pseudobarrel domain 118 256 IPR015300 -
Glsi05g2217 693 ProSiteProfiles PB1 domain profile. 581 662 IPR000270 GO:0005515
Glsi05g2217 693 FunFam Auxin response factor 125 229 - -
Glsi05g2217 693 Gene3D - 288 362 - -
Glsi05g2217 693 MobiDBLite consensus disorder prediction 548 562 - -
Glsi05g2217 693 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Glsi05g2217 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 669 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi05g2217 693 Gene3D - 577 669 - -
Glsi05g2217 693 Pfam AUX/IAA family 627 663 IPR033389 -
Glsi05g2217 693 FunFam Auxin response factor 288 361 - -
Glsi05g2217 693 Gene3D - 124 228 IPR015300 -
Glsi05g2217 693 CDD B3_DNA 125 227 IPR003340 GO:0003677
Glsi05g2217 693 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Glsi05g2217 693 MobiDBLite consensus disorder prediction 405 490 - -
Glsi05g2217 693 MobiDBLite consensus disorder prediction 563 585 - -
Glsi05g2217 693 SMART B3_2 127 229 IPR003340 GO:0003677
Glsi05g2217 693 MobiDBLite consensus disorder prediction 520 585 - -
Glsi05g2217 693 MobiDBLite consensus disorder prediction 405 502 - -
Glsi05g2217 693 SUPERFAMILY CAD & PB1 domains 579 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2217 Glsi-ChrGlsi05 68361616 68365246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2217 18 674 B3 DNA Binding Superfamily AT4G23980 59.910 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi05g2217 AUX_IAA 4.6e-08 CL0072