Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2212 ATGGCAAAGGCAATTGCTCTTTTCTCGGTTCCGACTCCTCATCACACTCGATTCTATAAGCGTAATTCCATATCCAGAAACTCATGGGCAACTGTCACTTACCCTTCTAACAAGTTGATTGTTCCTTTGTGTTCTCCTTCTTCAACTGCTGTTGTAGAAGATGGTCCTTCTTCAACAGATGCACTTCCTATTCAATCAGAATCCGCCGCCAAAGACTCTTCAGAGATTCCTCAAAGCGGTTGCAAGGCATGTGGAAGAGAAGAAATCGAGAAAGGATGTAATGGTGAAGGGAGAATTCAAGGTGGGATTGCTACAATACCAGGATTTGGCTGGTGGCCCATAAAGGCTTACAGGCCATGTCCTGGATTTGTGGCTTCTGGTGGTAGGTATAGGCGGCAAGGACAAAGCATGGATGAAGTTGCCTTTGGACGCAGTGAAAGAGCTTCTTTAAAAACCGGCAGTGACACCCAGCCAAGTGAGAAAAAGGAAGGTCGAAGGAAATTCAGGAGTAGTGCGGAAATGGAAGCTGAAACCAAAGGAAGAATCGAAAAAACGGTTCGAAAAATTCTGGAAGAATCTGACATGGACGAGGTGACGGAGTCCAAGATTAGGAAGCAGGCCTCCCAAGAACTCCAGCTCGACCTATCGCAGCCACAATACAAAACCTTCGTGAAGCAGGTTGTGGAGTCTTTTTTAGAGGAAAAACAAGACGAACCTGCCCAGGAGTACGATGATAATGGCGATCTTATAATTTGCAAGCTTTCAGAGAGGAGAAGGGTGACGATTCAAGATTTCAGAGGGAAAACTTTGGTCTCTATTCGGGAGTACTATAGCAAGGATGGCAAAGATCTTCCTTCTTCCAAAGGAATAAGTTTGACAGAGGAGCAGTGGTCAGCCTTAAAGAAAAATATACCTGCCATAGAAAAAGCCATTGAGAAAATGGAGTCAGACAACATATAA 960 0.4458 MAKAIALFSVPTPHHTRFYKRNSISRNSWATVTYPSNKLIVPLCSPSSTAVVEDGPSSTDALPIQSESAAKDSSEIPQSGCKACGREEIEKGCNGEGRIQGGIATIPGFGWWPIKAYRPCPGFVASGGRYRRQGQSMDEVAFGRSERASLKTGSDTQPSEKKEGRRKFRSSAEMEAETKGRIEKTVRKILEESDMDEVTESKIRKQASQELQLDLSQPQYKTFVKQVVESFLEEKQDEPAQEYDDNGDLIICKLSERRRVTIQDFRGKTLVSIREYYSKDGKDLPSSKGISLTEEQWSALKKNIPAIEKAIEKMESDNI 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2212 319 FunFam RNA polymerase II transcriptional coactivator KELP 241 317 - -
Glsi05g2212 319 Pfam DEK C terminal domain 178 232 IPR014876 -
Glsi05g2212 319 Gene3D - 167 235 - -
Glsi05g2212 319 PANTHER OS01G0235100 PROTEIN 4 165 - -
Glsi05g2212 319 SUPERFAMILY DEK C-terminal domain 177 233 - -
Glsi05g2212 319 Pfam Transcriptional Coactivator p15 (PC4) 252 303 IPR003173 GO:0003677|GO:0006355
Glsi05g2212 319 Gene3D Transcriptional Coactivator Pc4; Chain A 241 318 IPR009044 GO:0003677|GO:0006355
Glsi05g2212 319 MobiDBLite consensus disorder prediction 136 179 - -
Glsi05g2212 319 MobiDBLite consensus disorder prediction 156 179 - -
Glsi05g2212 319 SUPERFAMILY ssDNA-binding transcriptional regulator domain 251 313 IPR009044 GO:0003677|GO:0006355
Glsi05g2212 319 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 176 233 IPR014876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2212 Glsi-ChrGlsi05 68333713 68338797 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Glsi05g2212 DEK_C 5.2e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g2212 05 68333713 68338797 Glsi05g2212 05 68333713 68338797 ECH