Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2208 ATGGAAGCCGATTTCGTCACCAATGACATGCTAATAGAAGACGCCTTTGAAGCCGATGACAATGCGAATAATGTAAACTCAACGGATAATTTATCTAATGAAGGGGAAAGATGTGGTATTTGCATGGATATTGTTATTGATAGGGGAGTTTTGGATTGCTGTCAGCACTGGTTCTGTTTTGCATGCATTGACAACTGGGCTACCATCACAAGCCTCTGCCCACTTTGCCAGAATGAGTTTCAGTTGATTACATGTGTTCCAGTATATGATACCATTGGAAGCAATAAAGTTGAAGATGACTCATTCTCCAGAGATGATGACTGGTCCATTGAAGGGAAGAGTAACACTCTGTCATTTCCCTCATACTATATTGATGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAAATTCGAAGTGGATCAGCAACTACTGAAGGAGATTCCAGTCTTGATACATCAATTGCTTGTGATTCATGTGATATATGGTATCATGCTTTTTGTGTGGGATTTGATCCTGAAGGTACATCTGACACTACATGGTTGTGCCCAAGATGTGTGCTGGATGAAGTTCTTGAAAGAATGGATACCAGTTCGTTGGAGAGGACAACCATCGAATGTAACCCAGAGATTGGCAACAATGAATGTCATGCTGAGGAATCCTTTTCAGGAAAAGTGTCCGTGTCTGTTGCTGATACTGGAGAGACAGCTGTTGTTGTCTCTTTGGTTGAAGGAAATCAATGGATGCCACCATCAAGCGAGAAGGATTTGTCACCCCTTGAAGTTAACAAGGATCCAATGACTGAATCTTGTGTTTCCATATCTGACACCAACAATCACCAAAGAAAGACAGAGAAGAAGATTATTTCACCAATCATGGAGGAACAGGAACTGGAGCTGTCCTTATCACACAATGTATTCTGTAGCATACCTTCTAACTCCTTGGGGCCTGATGATTTGAAGAAAAGTGCTTATGGAGAAAGGAGTGAACCAGGTAGCTTCAGTGAACCCAAGATACTAAATGAATCCCTCAACAGAACTAGTCCATCCAGAAATGAATCTGATATGGGTCTTCATCTCGGTTTGTCAGTGGGCTCTTTTTTATCAGTTGATGACATGGACATGAATGCAACAAAAGATCAAGAAAATGATATCCGGCAGTTAAGTCCAGGAGAAATTCAGTTGAAAGGGTATGTAAAACCCAATTCTCATGAGGACAATGCTATAGTTATGGGTGGAAAGAGAAAGCATGTTGATAACAGTAATGATCAGGTTCACATAAAAGTTGATGACGGAGATGCCAAACTTGAACTTGGGGATGAAGTGTCACAAAAGAAACTTAGAGAAGATGGCAGTCAACTGATTAATGACAAGGACTCAGCAGATGCTTCTTTTTCAGAGAATACTAAAAAAGTCCCTTCCATTCCAGCTCTTTCCAGAGATGATGATTCAAAACATCGTCCAATGAAGGAGAATGCCACATCAGATATAATGAGTATAGTTAAAGGCACAAATCAGAGGATTTCAAAGGGACTTGGTGGCACTAAACCTTCTAATAAGTTAACCAAAAACAAAGAAAATATGGCAGGGTTGAGAGTGAAAAAGATCATGAAGAGAGCTCCTGATAAAGGGGAGTCGTCCTTGGTAGTCCAAAATCTAAGGGAGGAAATTAGAGAAGCTGTTCGTAACAAATCCTCTAAAAATTTTGGAGAAAACCTTTTTGATGCAAAGCTTCTTGCAGCATTTAGGGCTGCTATAGCTGGGCCTGCAACTGAACCTGTAAATAAGCTGTCGCCTATAGCTGTGAAGGCAAAGAAGTCTATGTTGCAGAAAGGGAAAATACGTGAACATCTAACGAAGAAAATTTTTGGGACTTCAAATGGAAGAAGAAAGCGTGCATGGGACAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCGACAAAGCCTGAAAAGATTGCAACTTTAAAGTCAGTTCTTGATCTCCTAAGAGAGACTTCAGAGAGCCCAGAATTAAGAGAGGGTCCTGAATGCCAGGCCAAGAATCCTATTCTTTCCAGGTTGTATTTGGCAGATACATCTGTTTTCCCACGAAAAAATGATGTCAAGCCACTTTCCGCCCTTAAAACTGCTGCTAACTCAGAGCAGAGTAAACATAACCCATCAGGAAGAGCGTCAAATCTATCTCTTGATGATAGTACTATTAAAGCAACAGAGATAAATAATGTTTTATCAAAGGCCAGAGTTTGTTCTTCTGAAAATAAAGTAAGTAAGAAGCTTGTTCATGGCTCCGTTGGTGATAGTTCAGCTTCTGGTAAAGTACCTTTAAGCAGACACTCAGAAGGGGCATCAATTTCTTGTTCTGGTGGTTCCAAAGTTGACTCAAAGGAGGTTGGCGTTAAATCAGATTCCATAAAGAGTGACAAAAGAAAATGGGCCTTAGAGGTTCTTGCGAGAAAAACAGCTGCTGCTGGCAAGAAAACAAATGAAAGTGAGCAAGATAATGCAAACCTTAAAGGAAATTATCCTTTACTGGCCCAATTGCCAGCTGATATGAGACCAGTATTGGCACCCAGTCACCACAATAAAATTCCTATATCAGTAAGGCAGACACAACTTTACCGCCTGACGGAGCACTTCTTGAGGAACACAAATCTGTCAGTCATTCGTCAAACTGCCGTTACAGAATTGGCTGTTGCAGATGCAATTAATATTGAAAAAGAGGTTGCTGACAGATCAAACAGTAAGCTTGTGTATCTAAATCTCTGTTCACAAGAGCTCTTGCATCGCTCAAGTAACAGAAAATCTAATGGAGTCACTGATTCAATTCCTCCAGTTTCATCAGCAGACCTTACTGATAGGTCAGAACAAAATGCTGATGATCTTTCAACTGACCCTGCAGTTGAAATAGCCCTGAAAAATGCTGGTCTTTTGTCTGATTCACCTCCTAGTAGTCCACACGAGAAGAGGGAAATATCCAATAAAGAAGATGATATGTCAGGGCCTGATAATATACTTGAACTGGATTCTCACCCAGAGATGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGAAGATTATATTGGTGCAAGTGTTGCGAAGGTCTCAAACCCACAAGAAGAAGAGTCGAAAATGAAACTCATTTTCTCCACCATGAACTTGAAAAATTCAGATACTGCTCTGGATTGGGTGGACTGTGAGAGGTTTGCAAACAATGAAGTGCCACGAGATCCCTCGTGCTCATCAAATCATAATGATGCAGGAAACAGGGACTCTGCAATTGATGCAGATTTTGAAGAATTATATGGCCCGGACAAAGAACCGCTTACAAAAAAATTTCCCGATGAGGAATCAATAACGTCACATGGAGAAGGCAATACAGGAACTATAACTGAGGGCAATGATTGTCATAAAGAACAAGTTTCGGACCACATAGTAAATGCATCATCTGAATTTGGGAATGAGAATCTCGCTGAGAATGTGCTTGTCTCTGCTATAGCTGGCAATTCGTCTAATATATCTGAGAGTAGTGAAGATGTCCGGAGGAAGGAAGAGAGATCTGACACTGCTGCTGAGCAGTCTGACTCTGCAAATCATATATCTAGGAAGGTAGAAGCTTACATCAAGGAACATATTAGGCCACTGTGCAAGAGTGGTGTGATCACAGCTGAACAGTACAGGTGGGCTGTCGCAAAAACTACAGAGAAGGTTATGAAGTACCATAGCAAAGCCAAGAATGCCAATTTCCTCATAAAGGAAGGCGAGAAAGTGAAGAAACTTGCAGAGCAGTATGTTGAAGCAGCCCAGCAGAATAAAAAAAAAAATTATTCCTCGTAA 3855 0.4073 MEADFVTNDMLIEDAFEADDNANNVNSTDNLSNEGERCGICMDIVIDRGVLDCCQHWFCFACIDNWATITSLCPLCQNEFQLITCVPVYDTIGSNKVEDDSFSRDDDWSIEGKSNTLSFPSYYIDENAVICLDGDGCKIRSGSATTEGDSSLDTSIACDSCDIWYHAFCVGFDPEGTSDTTWLCPRCVLDEVLERMDTSSLERTTIECNPEIGNNECHAEESFSGKVSVSVADTGETAVVVSLVEGNQWMPPSSEKDLSPLEVNKDPMTESCVSISDTNNHQRKTEKKIISPIMEEQELELSLSHNVFCSIPSNSLGPDDLKKSAYGERSEPGSFSEPKILNESLNRTSPSRNESDMGLHLGLSVGSFLSVDDMDMNATKDQENDIRQLSPGEIQLKGYVKPNSHEDNAIVMGGKRKHVDNSNDQVHIKVDDGDAKLELGDEVSQKKLREDGSQLINDKDSADASFSENTKKVPSIPALSRDDDSKHRPMKENATSDIMSIVKGTNQRISKGLGGTKPSNKLTKNKENMAGLRVKKIMKRAPDKGESSLVVQNLREEIREAVRNKSSKNFGENLFDAKLLAAFRAAIAGPATEPVNKLSPIAVKAKKSMLQKGKIREHLTKKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIATLKSVLDLLRETSESPELREGPECQAKNPILSRLYLADTSVFPRKNDVKPLSALKTAANSEQSKHNPSGRASNLSLDDSTIKATEINNVLSKARVCSSENKVSKKLVHGSVGDSSASGKVPLSRHSEGASISCSGGSKVDSKEVGVKSDSIKSDKRKWALEVLARKTAAAGKKTNESEQDNANLKGNYPLLAQLPADMRPVLAPSHHNKIPISVRQTQLYRLTEHFLRNTNLSVIRQTAVTELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRSSNRKSNGVTDSIPPVSSADLTDRSEQNADDLSTDPAVEIALKNAGLLSDSPPSSPHEKREISNKEDDMSGPDNILELDSHPEMDIYGDFEYDLEDEDYIGASVAKVSNPQEEESKMKLIFSTMNLKNSDTALDWVDCERFANNEVPRDPSCSSNHNDAGNRDSAIDADFEELYGPDKEPLTKKFPDEESITSHGEGNTGTITEGNDCHKEQVSDHIVNASSEFGNENLAENVLVSAIAGNSSNISESSEDVRRKEERSDTAAEQSDSANHISRKVEAYIKEHIRPLCKSGVITAEQYRWAVAKTTEKVMKYHSKAKNANFLIKEGEKVKKLAEQYVEAAQQNKKKNYSS 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2208 1284 PANTHER RING FINGER PROTEIN 41, 151 119 1271 - -
Glsi05g2208 1284 MobiDBLite consensus disorder prediction 477 492 - -
Glsi05g2208 1284 MobiDBLite consensus disorder prediction 988 1013 - -
Glsi05g2208 1284 MobiDBLite consensus disorder prediction 1178 1206 - -
Glsi05g2208 1284 MobiDBLite consensus disorder prediction 448 492 - -
Glsi05g2208 1284 SUPERFAMILY FYVE/PHD zinc finger 151 189 IPR011011 -
Glsi05g2208 1284 SUPERFAMILY RING/U-box 27 83 - -
Glsi05g2208 1284 ProSiteProfiles Zinc finger PHD-type profile. 70 190 IPR019787 -
Glsi05g2208 1284 MobiDBLite consensus disorder prediction 1126 1141 - -
Glsi05g2208 1284 Pfam Zinc finger, C3HC4 type (RING finger) 38 76 IPR018957 GO:0046872
Glsi05g2208 1284 MobiDBLite consensus disorder prediction 765 793 - -
Glsi05g2208 1284 SMART PHD_3 136 188 IPR001965 -
Glsi05g2208 1284 MobiDBLite consensus disorder prediction 458 474 - -
Glsi05g2208 1284 MobiDBLite consensus disorder prediction 937 957 - -
Glsi05g2208 1284 MobiDBLite consensus disorder prediction 337 355 - -
Glsi05g2208 1284 ProSiteProfiles Zinc finger RING-type profile. 38 77 IPR001841 -
Glsi05g2208 1284 MobiDBLite consensus disorder prediction 319 357 - -
Glsi05g2208 1284 ProSitePatterns Zinc finger RING-type signature. 54 63 IPR017907 -
Glsi05g2208 1284 Pfam PHD-finger 152 188 IPR019787 -
Glsi05g2208 1284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 188 IPR013083 -
Glsi05g2208 1284 MobiDBLite consensus disorder prediction 774 793 - -
Glsi05g2208 1284 MobiDBLite consensus disorder prediction 1107 1125 - -
Glsi05g2208 1284 MobiDBLite consensus disorder prediction 937 1013 - -
Glsi05g2208 1284 MobiDBLite consensus disorder prediction 1182 1206 - -
Glsi05g2208 1284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 115 IPR013083 -
Glsi05g2208 1284 SMART ring_2 38 76 IPR001841 -
Glsi05g2208 1284 SMART ring_2 128 187 IPR001841 -
Glsi05g2208 1284 MobiDBLite consensus disorder prediction 714 734 - -
Glsi05g2208 1284 MobiDBLite consensus disorder prediction 1107 1141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2208 Glsi-ChrGlsi05 68303383 68315714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2208 38 89 C3H Transcription Factor Family AT3G58030 37.037 4.76e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi05g2208 PHD 7.1e-08 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g2208 05 68303383 68315714 Glsi05g2208 05 68303383 68315714 ECH