Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2198 ATGACTTCCTTAGTTCCCTTTTTCTTTCTATTCCTTCTTCAGTATGCAAGTAGCGCTCAAGACGTTTGCGATAGCATGTCTTGTGGAGGAATTGATATTCAGTTTCCTTTCGGTTTGAAAGGAGCCAACGAAGGGCGTCGCTGTAGCTACCCCAATTTCCAGCTTTCCTGCGACAACCAGAGCCGGGCCATTCTTACTCTCCCATATTCCGGAGACTTCGTCGTCAGAAGTATCAATTACCAGGATCAAACCCTTGAGGTCAACGATCCCAATCACTGCCTACCAAAACGGTTCCAGCACAACCTCACCTTTTCAGGCTCGCCCTTCGACTTGGACCACACCGTTTATTATCTCTTCAACCTTACCTTCCTTCGCTGCCAGTCCAACATAACCGACTCATTCCCGGTGCCACCAATTTCTTGCCTCAGCGATCCCAGCAACTCCTCTTCAGTCATAGTTACATGGTCCAGACTTATAACCGGACCCTTGTCTGAATGGTGCGATGTGATTTCTTCAGCCTTCGTTCCCATTCCAAACGTGGCCATGTGGCCTTTTTGGCCCGATCTCACCCAAGATATAGGTTTGACGTGGACCGAGCCCAGTTGTGGGGGCTGTGTAGCGCGGGGGCAAGATTGTGGCTTCCTGGGGGATAAGGGTCTCCAAGTTGGGTGCTTCTCCAGCCCTCACAAGCAAGGCCCAGGTGTTTCAACAAGTGCCAAATATGGGTTAACATTCGGAGTGGGGATTCCTGGAATCCTATGTTTGATTGGACTGTCTTGTTTTATGTGCGGCAAGTTGAGGATGTATGCTCAACGGCGGCGCCAACCCAGCATAGAGCTTCCTACCTCAATTGTCCTGCAGCCGGGCCCTTATTTAATGGGTCTTGACGGGTCGACGATAGAAAAATATCCCAAGACTGTTCTCGGTGAGAGTGGGCGGTTACCCAAGCCCAACGATAATACCTGCCCCATATGCCTATCTGAGTATCAGCCCAAGGAGACGTTGAGGAGTATTCCCGAGTGCAACCATTATTTTCTTGCAGACTGTATAGACGAGTGGCTCAAGATGAACGCCTCATGCCCTTTGTGCCGGAATTCACCGGAGCCATCCTCGACAGTTACCCCTTCTTCTTCATTGTCTTCCTCTTCCTCGTTATCTACTGAGAATTGA 1170 0.5 MTSLVPFFFLFLLQYASSAQDVCDSMSCGGIDIQFPFGLKGANEGRRCSYPNFQLSCDNQSRAILTLPYSGDFVVRSINYQDQTLEVNDPNHCLPKRFQHNLTFSGSPFDLDHTVYYLFNLTFLRCQSNITDSFPVPPISCLSDPSNSSSVIVTWSRLITGPLSEWCDVISSAFVPIPNVAMWPFWPDLTQDIGLTWTEPSCGGCVARGQDCGFLGDKGLQVGCFSSPHKQGPGVSTSAKYGLTFGVGIPGILCLIGLSCFMCGKLRMYAQRRRQPSIELPTSIVLQPGPYLMGLDGSTIEKYPKTVLGESGRLPKPNDNTCPICLSEYQPKETLRSIPECNHYFLADCIDEWLKMNASCPLCRNSPEPSSTVTPSSSLSSSSSLSTEN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2198 389 SMART ring_2 322 363 IPR001841 -
Glsi05g2198 389 SUPERFAMILY RING/U-box 316 369 - -
Glsi05g2198 389 ProSiteProfiles Zinc finger RING-type profile. 322 364 IPR001841 -
Glsi05g2198 389 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 367 IPR046948 -
Glsi05g2198 389 MobiDBLite consensus disorder prediction 367 389 - -
Glsi05g2198 389 CDD RING-H2_EL5-like 322 364 - -
Glsi05g2198 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 369 IPR013083 -
Glsi05g2198 389 Pfam Wall-associated receptor kinase galacturonan-binding 23 89 IPR025287 GO:0030247
Glsi05g2198 389 Pfam Ring finger domain 320 364 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2198 Glsi-ChrGlsi05 68254109 68255889 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2198 17 369 C3H Transcription Factor Family AT2G25410 37.260 1.35e-59 196