Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2197 ATGGAAATGGCCCTCTTGTTCATGCTCATCCTTGTCTTGTTTGGTCACACGAGAACAAGAGCTCAATTTTGCGAAACCACATCCTGCGGTGGAGTTTCTATTGAGTTCCCTTTCAGCTTGAAAGAAGCGAACCAAAGCCGTCGTTGTGGGTACCCCGGATTCGAGCTTTCCTGTAACAGCCGGAGGCAACCCTTGCTTAGTCTACCAAACTCGGGAGAGTTCGTCGTGACCAGCATCTCCCTCGAGAATCAAAGGGTGTGGATCAACGACCCTAAGGAGTGCCTCCCCAGGAGGATCCTTAGTGGCATCAGCCCTGCAGCTGCAGATTCGCCATTCCAATTCGGCGACCTTTATAATCTTGTCAATTACTCCTTCCTTAACTGCCCTTCCAATGTAACCGACTCCTATCCAATACAGCCCATAAGCTGTCTAAGCACTGGCAACAACCAAAACCAATCGGTGCTAGCTGTGTTGTCCAATCCTCCCTTTCTAATGCCATGGACGTCGTCGTGCGAGCTGATTTCCTCAGCTTTGGTTCCTGTGGTAAATACTCGCTTATTCTGGACCAATTATTACGCCGATATCCAGTTGCAGTGGAACGACCCTAATTGTGGAAATTGTGAATCACGTGGAGGACGATGCGGGTTTTTCTTGGGCACTGCCGCTCCTTCTATTGCTTGTTACGACCTTCCTCCCCAAGCTCCAAGTCTTTCGAGGAAAGCCAAGTACGGTATAGCTTTAGGGCTGGGAATACCTGGATTTGTAGGTGTCATAGGCCTTGCATGTATCTTCTGGGGTAAGATGAAGATGCAGGATCAGCGACGGCAAGCCAGCACAGAATTTTCTACCTCAATTATCCCACATCCAGCTGTTATAGTGATGGGGCTTGATGGAGCGACTATTGAGAAATATCCGAAAACCCAGATCGGTGACAGTGGACGACTGCCCAAGCCCAATGACAATATTTGTTCTATATGTCTCTGTGAGTACCAGCCCAAGGAGACGTTAAGGACTATACCAGACTGCAATCACTATTTTCACGCTAATTGCATCGATGGGTGGCTCAAGATGAATGCTACTTGCCCCTTGTGCCGAAAGTTACCGGAGACACCCTCTTTTGTTACCTCTGATTTGCCTATATCTCCAACTTCAACTTCTTTATGA 1164 0.482 MEMALLFMLILVLFGHTRTRAQFCETTSCGGVSIEFPFSLKEANQSRRCGYPGFELSCNSRRQPLLSLPNSGEFVVTSISLENQRVWINDPKECLPRRILSGISPAAADSPFQFGDLYNLVNYSFLNCPSNVTDSYPIQPISCLSTGNNQNQSVLAVLSNPPFLMPWTSSCELISSALVPVVNTRLFWTNYYADIQLQWNDPNCGNCESRGGRCGFFLGTAAPSIACYDLPPQAPSLSRKAKYGIALGLGIPGFVGVIGLACIFWGKMKMQDQRRQASTEFSTSIIPHPAVIVMGLDGATIEKYPKTQIGDSGRLPKPNDNICSICLCEYQPKETLRTIPDCNHYFHANCIDGWLKMNATCPLCRKLPETPSFVTSDLPISPTSTSL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2197 387 Pfam Ring finger domain 322 365 IPR001841 -
Glsi05g2197 387 SMART ring_2 323 364 IPR001841 -
Glsi05g2197 387 CDD RING-H2_EL5-like 322 365 - -
Glsi05g2197 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 369 IPR013083 -
Glsi05g2197 387 Pfam Wall-associated receptor kinase galacturonan-binding 24 90 IPR025287 GO:0030247
Glsi05g2197 387 SUPERFAMILY RING/U-box 318 368 - -
Glsi05g2197 387 ProSiteProfiles Zinc finger RING-type profile. 323 365 IPR001841 -
Glsi05g2197 387 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 368 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2197 Glsi-ChrGlsi05 68249756 68251097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2197 22 368 C3H Transcription Factor Family AT2G46495 34.358 6.80e-55 182