Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2185 ATGAAGCCGGTGCGAGAGGAGGTCTTCGTGCCTGAGAAAATCATGAAAGGAGAAATTGGTAACATGCAAAACGGTGACATAATGAAGAGAAGAAAAGAAGTAATCGAGAAAAGAAAAGCAAAGATAAATGGTCAAGGGGCACGGGATGAAACGTACGGTTGGCGTAAGAGACGCGTGGTTGAGGCACACCAGGCTGTGACTTTTGAGTCCCGACCTTGCCCCTCTCTCTTCTATTCCCATGCCGTATCGCTGCAATTAATCGCAAAAGTAGCCCGGCAGAGGTCACTGAATCTCGCGTTCTTTCTAGCTCTACAGGAAAGAGCACTGGAAAATTTTGCCAGAACCATGGACGGATTGCAAGAGAGGGATGCGCAGGCTGAAATTCCCACTGATGCTGATATCGGGTCATCCCTATCAAATCTCATATTATCAGGTGGGGCAAACACCTTGGATTCAATTTTCTCTCATTGCCCACCAACAAATGCGACTACCAACCCCATGTTTGAGCCACTGGGCTCTTCCGGGTTTGAACCTTTGGGCTCTTCGGTCTACGTCCGTCAAAGAGACATTCTGCAGAAGTTCTATGAAGATAGCCGAGTGAGTACTTCTTTTGGTCGCATTTCCTTGACAAATCGACCTCTAAACTCTGTATGCGCAAGTTCTTTGATGAACTCCTGCAAGAAAAAACTATACAGGGGGGTGAGGCAGAGGCACTGGGGAAAATGGGTGGCAGAGATCAGACTCCCTCAGAACAGAATGAGAGTCTGGTTGGGAACTTATGAGACTGCCGAAACTGCTGCTTATGCGTACGATCGTGCCGCTTATAAACTCCGAGGGGAATATGCGCGTTTGAATTTCCCAAATCTGAAGGACCCAAGTAAGTTAGGATTCGGAGATTGCTCCAGATTGAATGCTTTGAAGACCTCAGTGGATGCTAAAATCCAGGCTATATGTCAAAAGGTGAAGAGGGAGAAATCCAAGAAGAGTGCGGCGAAGAAGCTGAATTCCAGCACCCACCAGATTAACAGTGGTCAGAGTGAGAAATCACCCAAGATTGACTCATCCTCTTGTTCATCGTCGTCGTTAATTTTTTATACTAACTGGACAAAAGAGTTGCCTTCCCCAACAGTTTCAGAAGATGGAATTTGGAAGGGTGAGAAGTCGCCGCCCTCTGTTTCAACGGAGTGTCGCACAATGGTAACAGAGGAATCAGAATTCGAAGGATGTTCCTTGGCAAGGATGCCATCCTTCGATCCCGAGTTAATTTGGGAAGTGCTGGCCAATTAA 1287 0.4693 MKPVREEVFVPEKIMKGEIGNMQNGDIMKRRKEVIEKRKAKINGQGARDETYGWRKRRVVEAHQAVTFESRPCPSLFYSHAVSLQLIAKVARQRSLNLAFFLALQERALENFARTMDGLQERDAQAEIPTDADIGSSLSNLILSGGANTLDSIFSHCPPTNATTNPMFEPLGSSGFEPLGSSVYVRQRDILQKFYEDSRVSTSFGRISLTNRPLNSVCASSLMNSCKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYETAETAAYAYDRAAYKLRGEYARLNFPNLKDPSKLGFGDCSRLNALKTSVDAKIQAICQKVKREKSKKSAAKKLNSSTHQINSGQSEKSPKIDSSSCSSSSLIFYTNWTKELPSPTVSEDGIWKGEKSPPSVSTECRTMVTEESEFEGCSLARMPSFDPELIWEVLAN 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2185 428 PRINTS Ethylene responsive element binding protein signature 253 269 IPR001471 GO:0003700|GO:0006355
Glsi05g2185 428 PRINTS Ethylene responsive element binding protein signature 231 242 IPR001471 GO:0003700|GO:0006355
Glsi05g2185 428 Gene3D AP2/ERF domain 230 288 IPR036955 GO:0003700|GO:0006355
Glsi05g2185 428 ProSiteProfiles AP2/ERF domain profile. 230 287 IPR001471 GO:0003700|GO:0006355
Glsi05g2185 428 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 159 426 - -
Glsi05g2185 428 SMART rav1_2 230 293 IPR001471 GO:0003700|GO:0006355
Glsi05g2185 428 MobiDBLite consensus disorder prediction 333 354 - -
Glsi05g2185 428 SUPERFAMILY DNA-binding domain 230 287 IPR016177 GO:0003677
Glsi05g2185 428 Coils Coil 102 122 - -
Glsi05g2185 428 CDD AP2 229 289 IPR001471 GO:0003700|GO:0006355
Glsi05g2185 428 MobiDBLite consensus disorder prediction 328 354 - -
Glsi05g2185 428 FunFam Ethylene-responsive transcription factor 2 229 288 - -
Glsi05g2185 428 Pfam AP2 domain 231 280 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2185 Glsi-ChrGlsi05 68175319 68179968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2185 129 428 AP2-EREBP Transcription Factor Family AT1G64380 49.854 9.35e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi05g2185 AP2 6.2e-13 CL0081