Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2179 ATGGACTTTTCCTTGCTAATTGAATTGAGAAACCCAATTGTTGGTATGGACAGTGTCTATAACAATGCTTGTTTTATGATTGACGTAGAAGAGACGGTTAATAATATGAAAACTGCTGCATTTATTATTCGTCACAAGGCACGTACAATAACCAAGTGCCTTGCCAATTATTTCCTTCCGTCGCAAACAGGCGCAGCTGTTCCTCTAATCAATTCTGCAGAAACAACTTATAAAAGGAAATTTTCAATTTTCATTGTCACTTTCGCTCTCACTGCTGTTGTCACTGTCGCTGCCGTGACGGGATATGCCGTCTCTAATCCTCCGGAACAAATTCTTATCTTTTTTGTTCTTCTTGGTGGGATCCCCGCGGCATGTGGTGGTGGTACCACGAGCAGTATGGTTCCCAGTAGTTTGGGTGATATGGGCCTGGACAAAGCAAAGGGTGATCTCGGTTTTAACAACACCGTGATCCTTGAGGTGTTGGGTCTGAGTTTGGCTATAGCCGCGAGTCTCTGTTTTGGAGGAAGTGTCCACCAGAGTTTGGCTGTGGCGCTGAAGTTGGTTTTGGGTGCTGCCGTAGCGCGCATGGTGTCCCTTGAAAGCCTTGCTAAAGCGAGCAGTAGTGAGTGGGAATTCATAGAGATGAGTAAGCAAGAGGAGGATCTCATCCACAGGATGTACAGGCTTGTCGGGAACAGGTGGGATTTGATAGCCCCACGCATTCCAGGTCGTAAACCGGAAGAAATTGAGAGATTCTGGATTATGAGACATGGTGATGCTTTTGCTGTTAGAAGAATTCAACATAAAGCCAAAAACTCCTTATTTTCTCTCCGTTATCTCCCTGAATCTGAAGCCCAAAAAGGCTATACCTTTCCGCTCGTCCGTATTGTATGTGAAAGCCCAGCGCACACGCTAAAGCCTACCAGCACTCTTTTGCTCACTGACCAAAGACTAGTCTTCGCTGAAAAACTCGCTTACTCAGTCAAACTTGGACTTTCTACCCTCCGGCCCTCCTTCTGCATCTTATTTGCACAGGTGGAATTTAAATACCATAGCTCCAATTCATTCTGTAAGCATCAATCCTTCGCTCCTCCACCCGCACTCCCACACTCATCTCTGCTCCATCCTCAAACCATTCAACAACAACAACAAATCAATTTAATTTCAAAACTCGTTCTCGCTACTTCCATGTTTATAACTTCTTATACTTCTCCATTGGAAGGGTGCTTTATATTTCTCAAGTTTCCAACTCCGCTGCAGAATAAGAAGCTGCTGGTTCTAGATAAAAGTGCATTTCCAGAGTAG 1305 0.446 MDFSLLIELRNPIVGMDSVYNNACFMIDVEETVNNMKTAAFIIRHKARTITKCLANYFLPSQTGAAVPLINSAETTYKRKFSIFIVTFALTAVVTVAAVTGYAVSNPPEQILIFFVLLGGIPAACGGGTTSSMVPSSLGDMGLDKAKGDLGFNNTVILEVLGLSLAIAASLCFGGSVHQSLAVALKLVLGAAVARMVSLESLAKASSSEWEFIEMSKQEEDLIHRMYRLVGNRWDLIAPRIPGRKPEEIERFWIMRHGDAFAVRRIQHKAKNSLFSLRYLPESEAQKGYTFPLVRIVCESPAHTLKPTSTLLLTDQRLVFAEKLAYSVKLGLSTLRPSFCILFAQVEFKYHSSNSFCKHQSFAPPPALPHSSLLHPQTIQQQQQINLISKLVLATSMFITSYTSPLEGCFIFLKFPTPLQNKKLLVLDKSAFPE 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2179 434 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 214 256 - -
Glsi05g2179 434 CDD SANT 214 253 IPR001005 -
Glsi05g2179 434 SUPERFAMILY Homeodomain-like 216 254 IPR009057 -
Glsi05g2179 434 Gene3D - 216 256 - -
Glsi05g2179 434 SMART sant 211 259 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2179 Glsi-ChrGlsi05 68132827 68142222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2179 215 308 MYB Transcription Factor Family AT3G13540 37.895 1.21e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi05g2179 None None None