Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2175 ATGTCATTTCGTGCTTTTGGGAGCAGCGTAAGGGGATACACCGAGCTCCCAGCAAGGAAAGTAGAGAGAGAGATGAAGATCGATTGTTTCAAGCGTAAGTTTCCCTACAAGCACAAAATTTTGCTCGTGAAGCTCGTGATTACCATATTCTTTTTTGGTCTCGCTTTTCGACTTTTTTTCTTCCATTCCACCGAAATTTCGCCCGTTTTTCCTGAGAAAACTGCGGTTCTCGAATCCCCTGTTTCAACTAAAGTTACTGAGAATGCAGCCAAAAATACAGATCAAGTGTTTCAAGCAGAAAAATGTGATCTTTTTAGCGGGGATTGGATTCCAAACCCCTCAGGTCCAGTTTACTCCAATGAAAGCTGCAACATCATCGAGGGCCATCAGAATTGCTTGAAAAATGGGCGCCCCGATACAGGATATCTATATTGGAGGTGGAGTCCGCGAGACTGTAAGTTACCTCAATTCGATCCAGGGAGATTTCTCAGCATGATGCGAAATAAAAACTGGGCATTAATTGGTGATTCGATATCACGCAATCATGTGCAGTCGTTGCTGTGCATGCTTTCAACGGTGGAGCAAGCTGTCATGGTCTACCACGATGAGGAATATAGGTCCAAAAAGTGGCACTTCCCCTCATACAACTTGAGCGTGTCAGTTATATGGTCACCATTCCTTGTAGAAGCTGCTATTTTTGAGGACATTAATGGTGTTTCAACTTCTGAAGTTGAGCTATCTCTTGACAAACTTGCTAGTGAATGGACGGATCAGTACCAGAACTTGGATTACATGATTATTTCAACTGGGAAATGGTTTCTTAAGTCTTCAATCTACTATGAGAATGACACTGTATTGGGCTGCCACTACTGTCCTAAAAGAAATCTGACAGAACTGGGGTTTAATTTTGCTTATCGCAAAGCCCTTCGACATGTTATGAACTTCATTGCATCTTCCAATCACAAAGGCTTGATCTTGTTTAGGACATCCACACCTGACCACTTCGAGAATGGGGAGTGGTTTAGTGGGGGAACTTGTAATAAAACAGCACCAATTAAGGAAGGTGAGATGGAAATGAAGGATTTGAATAGGATTCTTCGGGACATTGAACTCGAGGAGTTTGCAAAGGCAGCTGTTAATGCTTCAAGAAATGGAGTGAACTTTAAACTACTTGATCTTGCGCCACTTTCACTATTGAGGCCCGATGGACATCCTGGTCCATACAGAGAGTTTCATCCATTTGAGCAGGGGCAAAATGCTAAAGTTCAGAATGATTGTTTGCATTGGTGTTTACCGGGGCCAATCGACTCTTGGAATGACATAATAATGGAGATGGTCCTAAACGGGTGTCCTCTGTCAAAACCTCGTTCCCCTCAGAAAAACAGTATCGAATACCCTCTCTCTCCCACATACATGGCTGAGACAAGTGTTGAGGTGCCCTTGCAAGCCGATCAAGTCCGTACGAAGAGGTCACGGAGCCGAAGGGCGCTGAAGGAGAAAAACCCATCAACAAATGAGGCCAACGTCTTGGCTGCGAAGATCTCCGAGTCCTCTACACTACCGATTTCACTGGCGTCGGACCCCGGAAAGGAGAACCACGATAGTCTTTCTCACTCCCACTCCTCTCCCAAGAAAGGAAAAGCTGCCTCCAAAAAACAGTCGAAGCAATCTTTTGAGAAAGACTTGCTCGAGATGCAGGAGAAGCTGCAGCAGTTATGTTTTGAGAAGGAGAAGACTGAAGAGCTCTTGAAGGCCAAAGATGAGATGTTGAAGCAGAAGGAGGAAGAGCTTGACAATCGTGGCCGGGAGCAGGAGAAGCTTCAGATAGAGGGAAAAGAGATCAATAACTCATTTGTGAACTTCGCTTGTGCTATGAATATGATTGTTCAGAATTTGCCTATGCTGCGAGACAAGGATCAAGAAAAGAAGGACAAGAAGAGGAATGGACGCTCTGAAATGAAAAGGCCTTCACCACCTTACATTTTGTGGAGCAAAGATCAATGGGCTGAGATTAAGAAAGCGAACCCAGAGGCAGAATTCAAGGATATTTCAAACATTTTAGGGGCTAAATGGAAGGCCCTTCGTGCAGAAGAGAAGCAACCTTATGAGGAGAAGTATAATATTGAAAAAGACGCTTATTTGCGGATACTTGCAAAGGAAAAACGTGAAAGTGAGGCAATGAAGCTCTTAGAGGAGGAGCAGAAGCAAAAAACTGCCATGGAATTGCTTGACCAGTATATCCTGTTCAAACAGGAGACAGAACAAGAAAGCAAGAAGAACAGAAAAGAGAAGGATCCATTGAAACCAAAGCATCCTGTGTCAGCTTTTTTCTTGTTCACAAATGATAGACGGGCAGCTATTCTTGCAGAGAACAAGAGTATCTTGGAGGTTTCCAAGATCACAGCTGAAGAGTGGAAAATCATGACAGAAGAACAAAGAAGACCTTATGAAGAGATGGCAAAGAAGAACAAGGAGAAATATGTTCAAGAAATGGAAGCTTATAAACAGAAAAAGGATGAGGAGGCTGCCAATCTCAGAAAGGAAGAGGTGGAGCATATGAAACTTCAGAAACAGGAAGCCTTGCAACTGCTGAAGAAGAAGGAGAAAACTGAAAATCTGATTAAGAAATCAAAGATGAACCACCAGAAGAAGAGGCAGAACAAGGGAAATAAGAATTCTGATCCTAACAGGCCTAAGAGACCTGCATCCTCATTTCTACTATTCAGCAAAGAAGCAAGGAAGAGTTTTCAGGAGGAACGACCAGGAATCAATAACTCCACCCTGAATGTACTTATTTCGGTGAAATGGAAGGAACTGAGTGAGGCAGAGAGACAAGTCTGGAATGACAAAGCTACTGAAGCAATGGATGCATACAAGAAGGAATTGGAGGAATACAACAAATCCGTTGCTGCAAGCTTGGACCAGAAAATAGAAGAATGA 2940 0.433 MSFRAFGSSVRGYTELPARKVEREMKIDCFKRKFPYKHKILLVKLVITIFFFGLAFRLFFFHSTEISPVFPEKTAVLESPVSTKVTENAAKNTDQVFQAEKCDLFSGDWIPNPSGPVYSNESCNIIEGHQNCLKNGRPDTGYLYWRWSPRDCKLPQFDPGRFLSMMRNKNWALIGDSISRNHVQSLLCMLSTVEQAVMVYHDEEYRSKKWHFPSYNLSVSVIWSPFLVEAAIFEDINGVSTSEVELSLDKLASEWTDQYQNLDYMIISTGKWFLKSSIYYENDTVLGCHYCPKRNLTELGFNFAYRKALRHVMNFIASSNHKGLILFRTSTPDHFENGEWFSGGTCNKTAPIKEGEMEMKDLNRILRDIELEEFAKAAVNASRNGVNFKLLDLAPLSLLRPDGHPGPYREFHPFEQGQNAKVQNDCLHWCLPGPIDSWNDIIMEMVLNGCPLSKPRSPQKNSIEYPLSPTYMAETSVEVPLQADQVRTKRSRSRRALKEKNPSTNEANVLAAKISESSTLPISLASDPGKENHDSLSHSHSSPKKGKAASKKQSKQSFEKDLLEMQEKLQQLCFEKEKTEELLKAKDEMLKQKEEELDNRGREQEKLQIEGKEINNSFVNFACAMNMIVQNLPMLRDKDQEKKDKKRNGRSEMKRPSPPYILWSKDQWAEIKKANPEAEFKDISNILGAKWKALRAEEKQPYEEKYNIEKDAYLRILAKEKRESEAMKLLEEEQKQKTAMELLDQYILFKQETEQESKKNRKEKDPLKPKHPVSAFFLFTNDRRAAILAENKSILEVSKITAEEWKIMTEEQRRPYEEMAKKNKEKYVQEMEAYKQKKDEEAANLRKEEVEHMKLQKQEALQLLKKKEKTENLIKKSKMNHQKKRQNKGNKNSDPNRPKRPASSFLLFSKEARKSFQEERPGINNSTLNVLISVKWKELSEAERQVWNDKATEAMDAYKKELEEYNKSVAASLDQKIEE 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2175 979 MobiDBLite consensus disorder prediction 635 653 - -
Glsi05g2175 979 SUPERFAMILY HMG-box 642 716 IPR036910 -
Glsi05g2175 979 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 898 966 IPR009071 -
Glsi05g2175 979 Coils Coil 562 610 - -
Glsi05g2175 979 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 154 445 IPR026057 GO:0016740
Glsi05g2175 979 Coils Coil 817 887 - -
Glsi05g2175 979 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 478 974 IPR044601 GO:0003677
Glsi05g2175 979 SMART hmgende2 897 967 IPR009071 -
Glsi05g2175 979 SMART hmgende2 768 836 IPR009071 -
Glsi05g2175 979 SMART hmgende2 652 722 IPR009071 -
Glsi05g2175 979 MobiDBLite consensus disorder prediction 482 508 - -
Glsi05g2175 979 MobiDBLite consensus disorder prediction 866 904 - -
Glsi05g2175 979 Coils Coil 352 372 - -
Glsi05g2175 979 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 769 835 IPR009071 -
Glsi05g2175 979 Gene3D High mobility group box domain 636 719 IPR036910 -
Glsi05g2175 979 SUPERFAMILY HMG-box 756 841 IPR036910 -
Glsi05g2175 979 Gene3D High mobility group box domain 752 848 IPR036910 -
Glsi05g2175 979 Gene3D High mobility group box domain 878 975 IPR036910 -
Glsi05g2175 979 Pfam PMR5 N terminal Domain 100 153 IPR025846 -
Glsi05g2175 979 Pfam HMG (high mobility group) box 769 835 IPR009071 -
Glsi05g2175 979 Pfam HMG (high mobility group) box 898 966 IPR009071 -
Glsi05g2175 979 Pfam HMG (high mobility group) box 654 715 IPR009071 -
Glsi05g2175 979 CDD HMG-box_AtHMGB6-like_rpt3 890 966 - -
Glsi05g2175 979 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 653 721 IPR009071 -
Glsi05g2175 979 MobiDBLite consensus disorder prediction 520 557 - -
Glsi05g2175 979 CDD HMG-box_AtHMGB6-like_rpt1 654 721 - -
Glsi05g2175 979 MobiDBLite consensus disorder prediction 634 658 - -
Glsi05g2175 979 SUPERFAMILY HMG-box 893 968 IPR036910 -
Glsi05g2175 979 Coils Coil 948 975 - -
Glsi05g2175 979 CDD HMG-box_AtHMGB6-like_rpt2 769 834 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2175 Glsi-ChrGlsi05 68109391 68115911 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Glsi05g2175 PC-Esterase 1.5e-91 CL0264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g2175 05 68109391 68115911 Glsi05g2175 05 68109391 68115911 ECH