Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2169 ATGACTGCGCCTTGCTTCAAGTACACCAAGCACCTTAACCACACTAAACTTGTGCCACCGGAGCAACACTTACTGGTCTCCCGAGGAATGAAGTATCCGAGAGTTGTTAGAATATGTGTGACAGACAGCGACGCCACAGACTCCTCCAGCGACGAAGAAGGAGAGGGATTCGGGCGTCACCGAGGGAGGAAGTTCGTGAACGAGATTACCGTCGAGTGGTGCTCCGCCGAAAATGATGGAATCACTAAGAGCAAGCTTAGTAAGAGTAGCAGGAACAGGCGCTGCGGCAATAAAAGGAATAGAATATCGGGGAGTCAGCGGGCAATGACGGGGAAGAAGAAGTTCAGGGGAGTGAGACAGAGACCGTGGGGGAAATGGGGGGCAGAGATCAGGGATCCGTTGCGACGGGTACGGCTGTGGTTAGGTACGTATGATACGGCAGAGGAAGCTGCGATGGAGTATGACAAGGCAGCCATTAAGCTACGCGGAGCAGAGGCGCTGACGAATTTCATAGAGCCACCGGGGAAGGACAATTCGGGAGAAGAGTGTGAGGAGCAGAAATTAAGTTCTCCAAAATCTGTTCTTCAGTGCGGGGCTTCGTCAGAGGAAGCTGAATCTGTAACAACCAAAGATGAAATGAGTGAATCATCATCATCGTCATCATTATGGGTTTATGAGAAATTCTCAGAGTTTACGGCTAATGATATATTTGACTTGCAAACTTGGTTGCCGGCGGATATATTTGACAACACCAATATACCAGAAAGTATCTGCTGCGACACATTTGTTACTCCCACTGACAATTTTGATTTGGATTTGGGGTTTGGTTTCTCCTCCAGTTGGCATAGAGATGACTATTTCCAAGATATTGGCGATTTATTTGTTTCAGATCCGCTTGTGGCTCTTTGA 909 0.4818 MTAPCFKYTKHLNHTKLVPPEQHLLVSRGMKYPRVVRICVTDSDATDSSSDEEGEGFGRHRGRKFVNEITVEWCSAENDGITKSKLSKSSRNRRCGNKRNRISGSQRAMTGKKKFRGVRQRPWGKWGAEIRDPLRRVRLWLGTYDTAEEAAMEYDKAAIKLRGAEALTNFIEPPGKDNSGEECEEQKLSSPKSVLQCGASSEEAESVTTKDEMSESSSSSSLWVYEKFSEFTANDIFDLQTWLPADIFDNTNIPESICCDTFVTPTDNFDLDLGFGFSSSWHRDDYFQDIGDLFVSDPLVAL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2169 302 FunFam Ethylene-responsive transcription factor 2 113 172 - -
Glsi05g2169 302 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Glsi05g2169 302 CDD AP2 113 170 IPR001471 GO:0003700|GO:0006355
Glsi05g2169 302 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Glsi05g2169 302 MobiDBLite consensus disorder prediction 85 116 - -
Glsi05g2169 302 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
Glsi05g2169 302 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Glsi05g2169 302 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Glsi05g2169 302 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 204 - -
Glsi05g2169 302 Gene3D AP2/ERF domain 113 172 IPR036955 GO:0003700|GO:0006355
Glsi05g2169 302 MobiDBLite consensus disorder prediction 170 213 - -
Glsi05g2169 302 SUPERFAMILY DNA-binding domain 114 170 IPR016177 GO:0003677
Glsi05g2169 302 MobiDBLite consensus disorder prediction 189 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2169 Glsi-ChrGlsi05 68067607 68068515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2169 1 302 AP2-EREBP Transcription Factor Family AT4G23750 38.440 9.75e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi05g2169 AP2 5.8e-13 CL0081