Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2165 ATGAAATTTCTACGCATTTTCTCTTCCATTTGCCTTCTGTGTTTGATTTTCTGGCAAGGAAATGCGGAGCCGGTTGAAGATAAGCGAGCTTTGCTTGATTTGGTGAACAAGTTCCCTCACTCTCGCCCTCTGAATTGGAATGAGACCTCTTCCGTATGTACTAATTGGACTGGAGTCACTTGTAACGAAGATAAGTCCCGAGTAACCGGCATCCGATTGCCGGGGATCGGATTTCGTGGCGCAATTCCACCCAATACAATTAGTCGCCTCTCTGCGCTGCAAATTTTGAGCCTCAGATCCAATCTTATCAGTGGGCATTTCCCTTCTGACTTTGCTAATCTAAAAAACTTATCTTTACTCTATCTTCAATTTAACAACCTGTCGGGTTCTTTGCCGGATTTTTCAGTTTGGAAGAATCTTACTATTGTCAATTTGTCCAACAATCGTTTCAATGGGAGCATTCCTTTCTCATTTTCTAATTTAACTGAGCTTGCTGGTTTGAATCTTGCAAACAACTCGCTTTCTGGTGAAATTCCTGATCTCCAGGTTCCGAGATTGCAACAGTTGAACTTGTCTAACAACAATTTGCACGGTAGTGTGCCTAAATCCCTCCAGAGGTTTCCTAGGTCAGCATTCCTTGGTAATAACATTTCTCTTGGAAGTTCTCCTCACCTTTCTCCTGTACTTCCGCCTCCTTCCAAACCATATTCAAAATCTAAGAAACATGGAAGACTCCGTGAAACAACATTATTAGGAATTATAGCTGCTGCTGGTGTTCTAGGCCTCGTAGCATTTGGCTTTTTGATATTTGTATGCTTCTCAAGAAGAAGGGATCGAGATGGCTTCTCTGGGAAGTTGCAGAAGGGAGAAATGTCTCCAGAGAAAGCCGTTTCAAGGAATCAAGATGCAAATAATAAACTGGTTTTTTTTGAGGGATGTAACTATGCCTTTGACTTGGAGGATTTATTAAGGGCTTCTGCTGAGGTACTAGGCAAGGGAACATTTGGCACTGCATACAAGGCCATACTAGAGGATGCAACCACAGTGGTCGTAAAGAGGTTAAAGGATGTAGCTGTTGGAAAGAGGGATTTTGAGCAACACATGGAGATTGTGGGAAGTCTTAAACATGAGAATGTGGTTGAACTGAAAGCATATTACTATTCCAAGGATGAGAAATTGATGGTATATGAATACTACAATCAAGGGAGCATCTCTTCTTTGCTGCATGGTAAAAGAGGAGAGGATAGGGTGGCTTTAGATTGGGATACTCGGCTTAGAATAGCTATAGGTGCTGCAAGAGGGATTGCTCGAATACATGCTGAGAATGGTGGGAAGCTTGTGCATGGCAACATCAAATCTTCAAATATATTTGTCAACTCTAAGCAGTACGGTTGTGTATCTGATCTTGGCCTGGCTATGATAATGAGTTCACTTCCCCTACCCATATCACGGGCTGCTGGTTACCGAGCACCGGAAGTTACAGACACTAGAAAATCGGCACAGCCTTCAGATGTCTATAGCTTTGGTGTGGTGTTACTAGAGCTTCTGACTGGGAAATCCCCCATCCTCACTACAGGTGGTGATGAGATTGTCCACTTGGTGAGGTGGGTTCATTCAGTTGTGCGAGAGGAGTGGACGGCTGAAGTGTTTGACTTGGAGCTGATGAGATATCCAAATATTGAAGAAGAGATGGTGGAGATGTTACAGATAGCGATGTCATGCGTGGTAAGGATGCCTGATCAGAGACCTAAGATGTCAGAAGTGGTAAAGATGATAGAAAATGTCAGGCAGATTGATACAGAGAATCGGCCATCATCTGAGAACCATGCTGAAAGTGCAACACCGCCGTCAGTATTAAGGACTGAACATTAA 1872 0.4322 MKFLRIFSSICLLCLIFWQGNAEPVEDKRALLDLVNKFPHSRPLNWNETSSVCTNWTGVTCNEDKSRVTGIRLPGIGFRGAIPPNTISRLSALQILSLRSNLISGHFPSDFANLKNLSLLYLQFNNLSGSLPDFSVWKNLTIVNLSNNRFNGSIPFSFSNLTELAGLNLANNSLSGEIPDLQVPRLQQLNLSNNNLHGSVPKSLQRFPRSAFLGNNISLGSSPHLSPVLPPPSKPYSKSKKHGRLRETTLLGIIAAAGVLGLVAFGFLIFVCFSRRRDRDGFSGKLQKGEMSPEKAVSRNQDANNKLVFFEGCNYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKDVAVGKRDFEQHMEIVGSLKHENVVELKAYYYSKDEKLMVYEYYNQGSISSLLHGKRGEDRVALDWDTRLRIAIGAARGIARIHAENGGKLVHGNIKSSNIFVNSKQYGCVSDLGLAMIMSSLPLPISRAAGYRAPEVTDTRKSAQPSDVYSFGVVLLELLTGKSPILTTGGDEIVHLVRWVHSVVREEWTAEVFDLELMRYPNIEEEMVEMLQIAMSCVVRMPDQRPKMSEVVKMIENVRQIDTENRPSSENHAESATPPSVLRTEH 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2165 623 Gene3D Ribonuclease Inhibitor 136 225 IPR032675 -
Glsi05g2165 623 Gene3D Ribonuclease Inhibitor 26 135 IPR032675 -
Glsi05g2165 623 SUPERFAMILY L domain-like 37 209 - -
Glsi05g2165 623 MobiDBLite consensus disorder prediction 607 623 - -
Glsi05g2165 623 FunFam Probable inactive receptor kinase RLK902 24 182 - -
Glsi05g2165 623 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Glsi05g2165 623 Gene3D Transferase(Phosphotransferase) domain 1 400 615 - -
Glsi05g2165 623 PANTHER OS05G0588300 PROTEIN 6 606 - -
Glsi05g2165 623 SUPERFAMILY Protein kinase-like (PK-like) 328 592 IPR011009 -
Glsi05g2165 623 Pfam Protein kinase domain 327 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g2165 623 FunFam pollen receptor-like kinase 1 293 398 - -
Glsi05g2165 623 Pfam Leucine rich repeat 81 127 IPR001611 GO:0005515
Glsi05g2165 623 Gene3D Phosphorylase Kinase; domain 1 290 398 - -
Glsi05g2165 623 MobiDBLite consensus disorder prediction 599 623 - -
Glsi05g2165 623 ProSitePatterns Protein kinases ATP-binding region signature. 330 361 IPR017441 GO:0005524
Glsi05g2165 623 ProSiteProfiles Protein kinase domain profile. 324 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g2165 623 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 399 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2165 Glsi-ChrGlsi05 68049655 68052853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2165 1 617 Receptor kinase-like Gene Family AT4G23740 65.252 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi05g2165 Pkinase 9.9e-35 CL0016