Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2149 ATGGGCAACTGCAGCGGCATGCCCTCCGGCCAAACCCAACTCAACTCCGACGACGCCCACTCCGGCCGTCCTTCCAATGGCCTATCGGTCCTCCCTCCCTCAACCTCTATCCCACCACCTAAAGCGCCGCTTTCCTCCGCCGTTGGCCGCGTCCTTGGCCGACCCATGGAGGACGTTCGTTCCACCTACATCTTTGGCCGCGAACTGGGTCGTGGTCAATTTGGTGTTACCTACTTAGTTACCCACAAAGTCACCAAAGAACAATTCGCCTGCAAATCCATCGCCGCCCGCAAACTGATTAATCGCGATGATCTTGATGACATTCGCCGCGAGGTCCAGATCATGCATCACCTCACCGGCCATCGCAACATTGTGGAGCTTAAGGGAGCTTACGAGGACCGCCACTCGGTCAATTTAATCATGGAGCTCTGCGCTGGCGGGGAGCTCTTCGATAGGATCATAGCCAAAGGCCATTATTCGGAGCGAGCTGCAGCAAACTTGTGTCGCCAGATCGTAACCGTGGTGCATAATTGTCACACCATGGGAGTGATTCATAGGGATTTGAAGCCTGAGAATTTCTTGTTACTCAGTAAAGACGAAAGTTCACCTCTTAAGGCCACGGATTTTGGTCTCTCAGTATTTTTCAAGACAGGTGATATATTTAGAGATCTTGTTGGGAGTGCATATTATGTGGCTCCAGAAGTGCTGCGCAGAAGTTACGGACCTGAAGCTGATATTTGGAGTGCTGGGGTTATATTATACATTCTGCTCTGTGGTGTCCCGCCCTTCTGGGCCGAAAATGAACAGGGTATCTTTGATGCTATACTTCATGGGCGTATCGATTTTGCGTCAAATCCGTGGCCTTCCATATCAAGTAGCGCAAAAGATTTGGTTAAGAAGATGCTACGAGCTGACCCTAAAGAACGGCTTTCAGCTGTTGAAGTCCTTAATCATCCTTGGATGAGAGAAGATGGGGATGCATCTGATAAGCCTCTTGATATTGCTGTTTTGAGCAGAATGAAACAATTCCGGGCAATGAACAAGCTAAAGAAAGTAGCTCTGAAGGTAATTGCAGAAAATCTTTCTGAAGAAGAAATCATTGGCTTGAAAGAAATGTTCAAATCCATGGATACGGATAACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTACCCAAACTGGGTAGTAAGCTTTCTGAGTCTGAAGTAAGGCAGTTGATGGAAGCGGCTGATGTAGATGGAAACGGAACCATTGATTATATTGAATTTATAACAGCTACCATGCACATGAATAGAATGGAAAGAGAGGACCACCTATACAAAGCCTTTGAATATTTTGACAAGGATAAGAGCGGGTACATCACAAAGGAAGAGTTAGAATATGCCCTTAAGAAGTATAATATGGGTGATGAGAAAACAATAAAGGAGATCATTGCTGAAGTTGACGCAGACAATGATGGAAGAATTAACTATGAAGAGTTTGTAGCCATGATGAGGAAAGGCAACCCAGAATTGGTTAACAACCGACGTCGCAAATAA 1545 0.4621 MGNCSGMPSGQTQLNSDDAHSGRPSNGLSVLPPSTSIPPPKAPLSSAVGRVLGRPMEDVRSTYIFGRELGRGQFGVTYLVTHKVTKEQFACKSIAARKLINRDDLDDIRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIIAKGHYSERAAANLCRQIVTVVHNCHTMGVIHRDLKPENFLLLSKDESSPLKATDFGLSVFFKTGDIFRDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLCGVPPFWAENEQGIFDAILHGRIDFASNPWPSISSSAKDLVKKMLRADPKERLSAVEVLNHPWMREDGDASDKPLDIAVLSRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGSKLSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDKDKSGYITKEELEYALKKYNMGDEKTIKEIIAEVDADNDGRINYEEFVAMMRKGNPELVNNRRRK 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2149 514 ProSitePatterns EF-hand calcium-binding domain. 413 425 IPR018247 -
Glsi05g2149 514 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
Glsi05g2149 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Glsi05g2149 514 CDD STKc_CAMK 63 320 - -
Glsi05g2149 514 SMART serkin_6 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g2149 514 PANTHER SERINE/THREONINE-PROTEIN KINASE 60 496 - -
Glsi05g2149 514 SUPERFAMILY EF-hand 360 501 IPR011992 -
Glsi05g2149 514 Gene3D Phosphorylase Kinase; domain 1 65 148 - -
Glsi05g2149 514 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
Glsi05g2149 514 FunFam Calcium-dependent protein kinase 1 65 148 - -
Glsi05g2149 514 Pfam Protein kinase domain 65 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g2149 514 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Glsi05g2149 514 ProSiteProfiles Protein kinase domain profile. 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g2149 514 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
Glsi05g2149 514 ProSiteProfiles EF-hand calcium-binding domain profile. 364 399 IPR002048 GO:0005509
Glsi05g2149 514 SMART efh_1 475 503 IPR002048 GO:0005509
Glsi05g2149 514 SMART efh_1 368 396 IPR002048 GO:0005509
Glsi05g2149 514 SMART efh_1 404 432 IPR002048 GO:0005509
Glsi05g2149 514 SMART efh_1 440 468 IPR002048 GO:0005509
Glsi05g2149 514 Pfam EF-hand domain pair 439 501 IPR002048 GO:0005509
Glsi05g2149 514 Pfam EF-hand domain pair 369 429 IPR002048 GO:0005509
Glsi05g2149 514 MobiDBLite consensus disorder prediction 1 47 - -
Glsi05g2149 514 SUPERFAMILY Protein kinase-like (PK-like) 60 329 IPR011009 -
Glsi05g2149 514 MobiDBLite consensus disorder prediction 1 32 - -
Glsi05g2149 514 FunFam Calcium-dependent protein kinase 1 329 504 - -
Glsi05g2149 514 FunFam calcium-dependent protein kinase 1 149 328 - -
Glsi05g2149 514 ProSitePatterns Protein kinases ATP-binding region signature. 69 98 IPR017441 GO:0005524
Glsi05g2149 514 ProSiteProfiles EF-hand calcium-binding domain profile. 472 506 IPR002048 GO:0005509
Glsi05g2149 514 Gene3D - 330 504 - -
Glsi05g2149 514 ProSitePatterns EF-hand calcium-binding domain. 377 389 IPR018247 -
Glsi05g2149 514 Gene3D Transferase(Phosphotransferase) domain 1 149 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2149 Glsi-ChrGlsi05 67953763 67958406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2149 49 513 EF-hand Containing Proteins AT4G23650 81.075 0.0 814
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi05g2149 Pkinase 7.2e-73 CL0016