Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi05g2120 | ATGGGTCACCATTCCTGCTGCAATCAACAAAAGGTTAAGAGAGGACTTTGGTCCCCCGAGGAAGATGAGAAACTGATCAGATACATTACCACCCATGGCTATGGCTGCTGGAGTGAAGTCCCAGAGAAAGCTGGGCTTCAAAGATGTGGTAAGAGTTGTCGCCTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGCAGGTTTACTCCGGAGGAGGAGAAATTAATTATAAGCCTTCATGGGGTTGTAGGCAACAGATGGGCTCACATAGCAAGCCACTTGCCTGGTAGAACTGACAACGAAATAAAGAACTATTGGAATTCGTGGATAAAAAAGAAAATAAGAAAGCCTTCGGTGGCGAATTCAACCACCGGAGCACAAAGTGTGGATCATTCCCAATATAACTACAATCCCAATCAAATAGAGTTTGCAAACCAAGAGAATGTAACAACAAAGGCACAAGTGGAAGAAACTATGTTTTCTTCGACATGCCCCCTATTTATGTTTGACACTAGCTGTTTAGAAGGGTCAACAGTAGTGGACAACAATGGAAGAGCAGATATGTTCCACGATGGTATGGGTTTGAGCACGGAAACATGGAATGTGAGCCAGCATCAAGTGCAAGCCCTTCCTCCACCATCAGCAGCTTTTACAGGCATGGTCACCCCCAATTATCTGCCACCATTGATAGAGAACATGGTGCCAATTGAAGTACAGCCTTGTAGGATGGAGGAGGAAGGAGAAATAGCACTAGAGTGCTTGCAGAGGCAAGAGTTGAATGAATGGGTGGACACCCAACAACAATGTCCAAACTTTATTTTCTGGGACAACGTAGAAGGACAACTTGGTGGGGAAGAAATAGCACCAAATTCATCAAATATGGGAACAAATACACTTTCTTCTTTTCCTTCGTCCTTGTGA | 927 | 0.4391 | MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSVANSTTGAQSVDHSQYNYNPNQIEFANQENVTTKAQVEETMFSSTCPLFMFDTSCLEGSTVVDNNGRADMFHDGMGLSTETWNVSQHQVQALPPPSAAFTGMVTPNYLPPLIENMVPIEVQPCRMEEEGEIALECLQRQELNEWVDTQQQCPNFIFWDNVEGQLGGEEIAPNSSNMGTNTLSSFPSSL | 308 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi05g2120 | 308 | PANTHER | MYB DOMAIN PROTEIN 55 | 1 | 165 | - | - | |
| Glsi05g2120 | 308 | CDD | SANT | 69 | 112 | IPR001005 | - | |
| Glsi05g2120 | 308 | MobiDBLite | consensus disorder prediction | 288 | 308 | - | - | |
| Glsi05g2120 | 308 | FunFam | Transcription factor MYB26 | 68 | 138 | - | - | |
| Glsi05g2120 | 308 | SUPERFAMILY | Homeodomain-like | 11 | 108 | IPR009057 | - | |
| Glsi05g2120 | 308 | CDD | SANT | 17 | 61 | IPR001005 | - | |
| Glsi05g2120 | 308 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 9 | 61 | IPR017930 | - | |
| Glsi05g2120 | 308 | Pfam | Myb-like DNA-binding domain | 67 | 111 | IPR001005 | - | |
| Glsi05g2120 | 308 | Pfam | Myb-like DNA-binding domain | 14 | 61 | IPR001005 | - | |
| Glsi05g2120 | 308 | SMART | sant | 66 | 114 | IPR001005 | - | |
| Glsi05g2120 | 308 | SMART | sant | 13 | 63 | IPR001005 | - | |
| Glsi05g2120 | 308 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 62 | 116 | IPR017930 | - | |
| Glsi05g2120 | 308 | FunFam | MYB transcription factor | 6 | 66 | - | - | |
| Glsi05g2120 | 308 | Gene3D | - | 6 | 66 | - | - | |
| Glsi05g2120 | 308 | ProSiteProfiles | Myb-like domain profile. | 9 | 61 | IPR001005 | - | |
| Glsi05g2120 | 308 | Gene3D | - | 68 | 138 | - | - | |
| Glsi05g2120 | 308 | ProSiteProfiles | Myb-like domain profile. | 62 | 112 | IPR001005 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi05g2120 | Glsi-ChrGlsi05 | 67744654 | 67746340 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi05g2120 | 1 | 297 | MYB Transcription Factor Family | AT1G63910 | 50.970 | 2.27e-105 | 310 |
Transcription factors information