Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2112 ATGGCATCATCATCAGCTGGATTCTGCCACCCGGATATATCATCAACCAACCCAACCATTCCGACCTATCTGGTGAACCAGATCCAAGGCTTTGTGTCCGACCCAGAGATGTTCAACCTCACTGCAGGCATGGAGATGATAGGGTTCTCCAAGAATCCTGAAGGCCCTTCCTCTTCCACCAATTTCTATCATGATTCTGCCCCTTGGCAGGACAACAGACTACTTGTGGATGATTCTTCTATAAGGTGTGTGTTCCCTTGTGAAGGAAATGAAAGGCCTCGTCAAGGGCTTTCACTCTCCCTCAGTTCTAGCAATCCTTCAGGTATTGGTTTACTATCTTTTGAACTAAGACATGCTAACAAGCAGCAAGAACTAGAAGATTTTGTTTCTTCAAGTTCAAGAGAGGGGTTCTTTGGAAAAGCTCCAAATCTCTATCAAGGACATTTCCTTCTCAAGAACTCCAAGTACCTGGTCCCTGCACAGGAGCTTCTGACAGAGTTTTGTAGTCTCAGAACGAAGCAAAGTGATATACTGCGGGAAAAGTCTCACAAAAACAAGCAGTGGGAAGAGGACAACGGTAGCGGTTCATCAAAGAAACATCCTCTAATTAGCTCCCTAGAATTCGTAGAATTGCACAAGAGAAAGACAAAGCTGCTTTCGATGCTGGAAGAGGTTGACAGAAGATACAGGCACTACCGTAATCAGATGAAGGCGGTGGTATCTTCGTTTGAAGCAGTGGCTGGAAATGGGGCTGCCAAAGTCTACTCGGCGCTGGCTTTAGAAGCCATGTCAAGGCATTTCAAATGTCTGAAAGATGGGATTTTGGGTCAGCTTGAGGCCACAAGGAAAGGCATGGGAGAGAAAGATCCAGTTGCGCCGGGCACAACAAGTGGCGAAACACCAAAGCTCAAAATCATTGACCGAGAGCTAAGGCAGCAAAAGGCCTTTCAGCAGATGAACATGATGGAAACCCATCCATGGAGACCCCAACGTGGCCTTCCCGAACCATCTGTCTCCGTCCTTCGAGCCTGGCTTTTCGAGCATTTTCTCCACCCGTACCCAAGCGATGTTGATAAACATATATTAGCCCGCCAAACTGGCCTCTCAAGAAGCCAGGTGTCAAATTGGTTTATTAATGCAAGGGTGAGGTTATGGAAGCCAATGGTGGAAGTGATGTACGTGGAAGAAATGAAAGGGCATGAAAACAACGGGGCATGTTCGTCGGACTGTGTGTCATCCATCATGAATAACCCGGTTGAGAAAAAAGACCAAAACATTGTGGGGGGAGCGTCGACAGATACATTTGGGTCGGTGGAGCTTGATTTTTCGGGAGGCATGGTTTGCTACAAGGGTGGGGATGTGTCTTTGACGCTAGGGTTACAGCAGCATGGAGTGAGCTTGGGAGAAACTCAGAGCTCAGTATTCTACCAAAGTGAGCAAATGGATGATTGTGAAGCAGTTGAGTACTCGGTTTTGGAGGGCCAAGGACAACATTTGCCCTACAAAAAACATTTGCTGGGGGTACCGCTACACACACACATGCTTCATGACTTGGCAGGTTAA 1563 0.4715 MASSSAGFCHPDISSTNPTIPTYLVNQIQGFVSDPEMFNLTAGMEMIGFSKNPEGPSSSTNFYHDSAPWQDNRLLVDDSSIRCVFPCEGNERPRQGLSLSLSSSNPSGIGLLSFELRHANKQQELEDFVSSSSREGFFGKAPNLYQGHFLLKNSKYLVPAQELLTEFCSLRTKQSDILREKSHKNKQWEEDNGSGSSKKHPLISSLEFVELHKRKTKLLSMLEEVDRRYRHYRNQMKAVVSSFEAVAGNGAAKVYSALALEAMSRHFKCLKDGILGQLEATRKGMGEKDPVAPGTTSGETPKLKIIDRELRQQKAFQQMNMMETHPWRPQRGLPEPSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEVMYVEEMKGHENNGACSSDCVSSIMNNPVEKKDQNIVGGASTDTFGSVELDFSGGMVCYKGGDVSLTLGLQQHGVSLGETQSSVFYQSEQMDDCEAVEYSVLEGQGQHLPYKKHLLGVPLHTHMLHDLAG 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2112 520 Pfam Associated with HOX 151 274 IPR006563 -
Glsi05g2112 520 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 80 409 - -
Glsi05g2112 520 MobiDBLite consensus disorder prediction 180 199 - -
Glsi05g2112 520 Gene3D - 330 391 - -
Glsi05g2112 520 SMART HOX_1 327 391 IPR001356 GO:0003677
Glsi05g2112 520 MobiDBLite consensus disorder prediction 180 196 - -
Glsi05g2112 520 SUPERFAMILY Homeodomain-like 328 394 IPR009057 -
Glsi05g2112 520 CDD homeodomain 327 388 IPR001356 GO:0003677
Glsi05g2112 520 ProSiteProfiles 'Homeobox' domain profile. 324 387 IPR001356 GO:0003677
Glsi05g2112 520 FunFam BEL1-like homeodomain protein 4 330 392 - -
Glsi05g2112 520 SMART prehox3 145 276 IPR006563 -
Glsi05g2112 520 Pfam Homeobox KN domain 344 383 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2112 Glsi-ChrGlsi05 67696074 67698474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2112 24 519 Homeobox Transcription Factor Family AT5G41410 42.762 6.54e-120 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Glsi05g2112 POX 2.1e-45 No_clan