Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2109 ATGGGATTTCCAGTGGGCTACACAGAGCTTATCTTCCCGAAGCTCTTTCTGCACATCCTTTCTGTATTGGGTTTCCTCAGAAAACTCATAACCGTCCTCTCCGTCTATCTGGGTCTCCGCGATTTCCTCGAACCACACCATTCCACATCCGAATTTCACTCCCTCTCTGCGCTGCTCATCCGGGAAATCCTGCCAGTGGCCAAGTTCTCGGAGCTGGTCGACGTCGACCCTCCCGACAGCTGCGCCGTGTGTCTATACGAATTCGAAGCGGAGGACGAGATCAGACGACTCACATACTGTAGACACATATATCACCGGGGCTGCCTGGACCGTTGGATGGGATATGATCAGAGAACATGCCCCTTGTGTCGAACACCCTTCATACCCGACGACACGCATGGAGTCTTCTATGAGACACTCAGGGCTGTCCCTGAATTTTACCAAGAATCACAATATCCTCACGTTACTGCTTTGTAG 477 0.5178 MGFPVGYTELIFPKLFLHILSVLGFLRKLITVLSVYLGLRDFLEPHHSTSEFHSLSALLIREILPVAKFSELVDVDPPDSCAVCLYEFEAEDEIRRLTYCRHIYHRGCLDRWMGYDQRTCPLCRTPFIPDDTHGVFYETLRAVPEFYQESQYPHVTAL 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2109 158 SUPERFAMILY RING/U-box 61 130 - -
Glsi05g2109 158 ProSiteProfiles Zinc finger RING-type profile. 81 124 IPR001841 -
Glsi05g2109 158 SMART ring_2 81 123 IPR001841 -
Glsi05g2109 158 Pfam Ring finger domain 79 124 IPR001841 -
Glsi05g2109 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 131 IPR013083 -
Glsi05g2109 158 SMART ringv_2 80 124 IPR011016 GO:0008270
Glsi05g2109 158 PANTHER RING ZINC FINGER PROTEIN-RELATED 38 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2109 Glsi-ChrGlsi05 67681969 67682445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2109 1 140 C3H Transcription Factor Family AT1G63840 53.947 7.89e-51 158