Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2106 ATGAATTCCGCTTCAACGTCTTCTAATGTCTGCGGTTTTGATGCTTCTTTCCACAGACATTCAAGCTCAGACATGGTCTCCTCTGATGGAGGCGGAGACCTGTTTTTGTCTGACCCTTTTCCTTTCCCTTTCTTCACCGGCTCCCCCTCAAATACACTGGATGAAACTCCTTCCTTTGACCCCTTTTCCCCTTCTTTCTTTCAATTTTCTCCTCCGAGTACCCACTTGGAAAACCTGAGCATTTACCAGGCTAACCTGTCAAATGGCCCTAACTTAGAAAGTGAGTTCGGGAATTTCTCTGTTTTGGATGGGTTGAACCTAAAAGTGAAAAGTGAGGAATGCCAAATGGGTGTCGATTATGGCTACAGTCAGCACTTTGCTCCTCACAGTTACAGTGGTGCTGAAAATGTATCAAAGTTCATGCAAAGGAGCTACAGCAGTAACTCTTTTGATGGGAAGCCTGGTTTTCTCTTTCAACCGCACTATGATACACTCATGGACTCTTCAAATTTTCAAGCCCAGGCCTTAAGTTCTCCCGAAAACGGTTTCTTCACTGGACAAATGAGGAGGGTATGCAGTACAGGAGATTTGCAGAACATCACAGCGACTCAAACGTCCCCAAGGGAGGCCTCGTTCTTGGAGGAAGCAAACTTCAAAGTAGGACGTTACAGTGCGGAAGAACGAAAAGAGAGAATTTCGAAATACAGAGCCAAGCGAAGCCAGAGGAACTTCAACAAGACTATTAAGTATGCATGCCGAAAAACACTAGCCGACAATAGACCGCGCATACGTGGCAGATTCGCACGCAACGACGAGAGCAGCGAGATTCCCAAGGCTCCATGTTCAGCCAGAGATGAAGACGAAGTCGAGTTCTGGATTGATGGGTTGAACGAAGAGCGAGAGGATATAACAGCTAGCGCAGCACAACATGTGAACAGTTATGGAGGATTGCAACAGCAAAAGTCACCTGTTAGAATTGCCCCAGTAGGGCAGTGCAAGGCTATATTGGAACTCAAGTATTCCGCTTTGCCTTCTGTATGTGTGTGTGTTGGTAAGAATGCATGTCGTCACTTGGCCCCTCAAGGTCAGAAAAATGGTTAG 1101 0.4632 MNSASTSSNVCGFDASFHRHSSSDMVSSDGGGDLFLSDPFPFPFFTGSPSNTLDETPSFDPFSPSFFQFSPPSTHLENLSIYQANLSNGPNLESEFGNFSVLDGLNLKVKSEECQMGVDYGYSQHFAPHSYSGAENVSKFMQRSYSSNSFDGKPGFLFQPHYDTLMDSSNFQAQALSSPENGFFTGQMRRVCSTGDLQNITATQTSPREASFLEEANFKVGRYSAEERKERISKYRAKRSQRNFNKTIKYACRKTLADNRPRIRGRFARNDESSEIPKAPCSARDEDEVEFWIDGLNEEREDITASAAQHVNSYGGLQQQKSPVRIAPVGQCKAILELKYSALPSVCVCVGKNACRHLAPQGQKNG 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2106 366 ProSiteProfiles CCT domain profile. 228 270 IPR010402 GO:0005515
Glsi05g2106 366 Pfam CCT motif 228 270 IPR010402 GO:0005515
Glsi05g2106 366 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 60 298 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2106 Glsi-ChrGlsi05 67666193 67672139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2106 224 275 C2C2-CO-like Transcription Factor Family AT5G24930 50.000 5.98e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi05g2106 CCT 9.9e-18 CL0281