Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2100 ATGGGCGGTTGCTGTTGTTGTTCTTCCAAAGAAACTGAATTGAACGCTCCACCAGCATACTACTATTACCCAAGAGCATCGGAGGAGCATGTTCCACTATCATCTCATCATGGTTCTACATCCGGAGGACTCCTAGTTGATACTAATCTAGAAACTTCAAGTCCTGATACTTATAGACCACCTCCTGCTCCTATCCCTTTCAGTGTTACTTTAGTTGTCACTCAAACTCCACCTGGGGCTCATGAAATTTGTGGTGATAAGGCTAATGCCTCCCTGCACTCAGTTCGAGAAACAATTACTAGTGACAATCATGGAACCTTGGCTAAGTTGGAAGAGCTGAAAGAATCAGAATGCAAAGTTCAGAGTGATTTAGAACTGGATTCAGCAAAGGATTCTGAAATTGAACTTCCGAAGTTGGCAGAACCTGTCGTTTTAGTAGAAGAGGAGGATGCATGTCCAATCTGTTTAGAAGAGTATGATGCAGAGAATCCAAAACTCAGCACAAAATGTGATCATCATTTTCACCTCGCATGCATTCTGGAATGGATGGAAAGAAGTGAAACATGTCCTGTGTGTGATAAGGATATGGTGTTCGACCCTCCAATTGATTAA 612 0.4232 MGGCCCCSSKETELNAPPAYYYYPRASEEHVPLSSHHGSTSGGLLVDTNLETSSPDTYRPPPAPIPFSVTLVVTQTPPGAHEICGDKANASLHSVRETITSDNHGTLAKLEELKESECKVQSDLELDSAKDSEIELPKLAEPVVLVEEEDACPICLEEYDAENPKLSTKCDHHFHLACILEWMERSETCPVCDKDMVFDPPID 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2100 203 SUPERFAMILY RING/U-box 144 199 - -
Glsi05g2100 203 ProSiteProfiles Zinc finger RING-type profile. 152 193 IPR001841 -
Glsi05g2100 203 FunFam Putative E3 ubiquitin-protein ligase RHB1A 129 197 - -
Glsi05g2100 203 CDD RING-H2_AIRP1-like 148 196 - -
Glsi05g2100 203 SMART ring_2 152 192 IPR001841 -
Glsi05g2100 203 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 34 199 - -
Glsi05g2100 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 198 IPR013083 -
Glsi05g2100 203 Pfam Ring finger domain 151 192 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2100 Glsi-ChrGlsi05 67610788 67612652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2100 1 203 C3H Transcription Factor Family AT5G41350 53.704 6.80e-71 213