Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2088 ATGGAGAAGGAGGAGGATGTTAAGCTTGGAGCAAACAAATTCTCAGAGAGGCAGCCCTTGGGCACAGAAGCTCAGACTGACAAAGACTACAAGGAGCCACCACCGGCTCCCTTGTTTGAGCCAGGGGAGCTCAAGTCATGGTCATTTTACAGAGCGGGGATCGCCGAGTTCATGGCCACCTTCTTGTTCCTCTACATCACCATCTTGACTGTTATGGGTGTGAACAGGTCACCTAGCAAGTGTTCCTCTGTTGGCATTCAAGGGATTGCTTGGGCTTTTGGTGGCATGATCTTTGCCCTTGTCTACTGTACAGCTGGGATATCAGGTGGACACATCAATCCAGCTGTGACCTTTGGTCTCTTTCTGGCTAGGAAACTGTCCCTCACGAGAGCCCTATTCTACATAGTCATGCAGTGCCTTGGAGCCATCTGTGGTGCTGGTGTTGTGAAGGGCTTTGAGGGTAATGCTCGATATGAGATGTACAAAGGTGGAGCAAATTTTGTGAGTTCCGGATACACTAAAGGTGATGGTCTTGGAGCTGAGATTGTTGGCACCTTTGTCCTTGTCTACACTGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCTCACGTTCCTATTTTGGCCCCTCTTCCCATCGGGTTTGCCGTGTTCTTGGTCCACTTGGCCACCATTCCTATCACAGGAACTGGCATCAACCCAGCTAGGAGTCTGGGTGCTGCCATCATCTTTAACAGAGACCTTGCGTGGGATGACCAATGGATCTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCGGCTGTATATCACCAGATAGTCATCCGAGCTATTCCTTTTAAGACTAGGGATTAA 861 0.4971 MEKEEDVKLGANKFSERQPLGTEAQTDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITILTVMGVNRSPSKCSSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFEGNARYEMYKGGANFVSSGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNRDLAWDDQWIFWVGPFIGAALAAVYHQIVIRAIPFKTRD 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2088 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 11 281 IPR034294 -
Glsi05g2088 286 SUPERFAMILY Aquaporin-like 43 278 IPR023271 -
Glsi05g2088 286 Gene3D Glycerol uptake facilitator protein. 36 284 IPR023271 -
Glsi05g2088 286 PRINTS Major intrinsic protein family signature 130 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi05g2088 286 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi05g2088 286 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi05g2088 286 PRINTS Major intrinsic protein family signature 93 117 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi05g2088 286 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi05g2088 286 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi05g2088 286 FunFam Probable aquaporin PIP1-2 36 286 - -
Glsi05g2088 286 CDD MIP 51 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi05g2088 286 Pfam Major intrinsic protein 43 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi05g2088 286 NCBIfam MIP family channel protein 55 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi05g2088 286 ProSitePatterns MIP family signature. 111 119 IPR022357 -
Glsi05g2088 286 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2088 Glsi-ChrGlsi05 67528931 67530454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2088 3 286 Major Intrinsic Protein MIP AT3G61430 85.563 4.89e-174 480
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g2088 05 67528931 67530454 Glsi05g2088 05 67528931 67530454 ECH