Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2085 ATGGACCACATCATTGCTACGAACTCAACCTTCTTGAAGATTTCCAGGACAACCTCCATTCTGGTTTTGGGCCAGACCTTAAGATTTTGTGGGCTTTTGGACCTCTTCACTGTCGCCTTGGAAGGAGGCAACTGTTGTCCCATTTGGAACTCTGAATTCCGTCGTTTTGATCTTGGTTTTGCGGTTATTATTAGCGTGCTCAATTATGGGGAAAAAGGTGTTTTTGGTGGCAGGGGTGTAGGTCCCAGGGATCTAGAAATTCAGCTAGACGCGTGCTCTTGTTGCTACTTGTGGAAAAATATTCTGAATCACATAAATAAGAATCTGGGTCTGGAAATGGTACCAGAGAACCTGAAGAAACAACTTTCTTTGGCTGTGAGAAGCATCCAGTGGAGCTACGCAATCTTCTGGTCTAGTTCGGCTAGCCAACCCGGGGTGTTGGAATGGGGTGAAGGATATTACAATGGGGACATCAAGACTAGGAAAACAAGCCAAGCAGCAGAACTTAATACTGACCAAATAGGTTTGCAGAGAAGCGAGCAGCTGAGAGAGCTATACGAGTCCCTCGCGACTGCAGAATCCAGTCCACAAACTAAAAGGCCTTCAGCTGCACTATCCCCGGAAGATCTCACAGATACAGAGTGGTATTACTTGGTTTGCATGTCATTCATATTCAACATTGGCGAAGGGTTACCAGGAAGAACTCTAGCGAATGGCCAACCCATTTGGCTGTACAATGCCCATGTTGCCGATAGTAGAGTTTTTAGTCGCTCCCTGCTGGCAAAGAGTGCATCCATTCAGACGGTGGTGTGCTTCCCCTTTCTGGAAGGTGTTCTTGAGCTAGGTACAACTGATCTGGTCTCAGAAGACCTCAGTCTCATTCAAAGCATCAGAACCTCTTTCTTGGATATTTTAGACACCAAGGTTCACAAGACAACTGGAGTCGCATTAAATACAAGAAACGACAAAGATGTTGCCTGTGCAGTAATTGATCATAATGGTTTTGAAGTTGGATATGAAGTAGCACCCAATGCAGCTTCTCCTAATAGTAGTTCAAATGCATTTCAAGCTAATCAACCAGTGGATGAGACATTCATGGTCGAAAGGATAAATGGTGGTGCTTCTCAAGTCCAAAGCTGGCAAGTGATGGAGGATGAATTGAGTAATTGTGTCCATAACTCCATGAATACTAGTGACTGTATATCTCAGACTTTTGCTGGTCCTGAAAAGAATGCCTCTGTTCCCAAGGGTGACCATTGTGGGCAAGATCTTCAACAGTGCAAAAACACAAAAATGACTTTAAGGGATGTTCATAGTGATGATTTGCATTATCAGAGTGTTCTTTCTGCTCTTTTTAAAAGCTCGGACCAGTTAATTATGGGAGTGCAATTTCAAAATTCTCATAGGGAATCTAGCTTCGTTGGTTGGAACAATGTAGGTTCAATGGGTTGTCAAAGGCCGAGAGGAGGAACCCAACAAAAAGTATTGAGGAAGGTATTGTTTGAGGTTCCTCGGATGCACATAGATTGGCTGCTTGAGTCCCAAGAAGAAAATGACTATAAAGAGGGAATGAGACCTGAGGCTGATGAAATTGGCATGAACCACGTATTGTCAGAAAGAAGGAGAAGGGCAAAACTGAATGAAAGGTTTTTAACCCTTAGATCAATGGTTCCTTCAATTAGTAAGGATGACAAAGTTTCAATACTAGATGAGGCAATAGAATATCTTAAAAAGCTTGAGAAAAAGGTCAGAGAGTTGGAAGCTCGAAGGGAGTTCAAAGATTTAGAGACTAGAGCTAAAAGAGCACCTCAAGATGTGGTGGAAAGGACTTCTGATAATTATTGTAACAACAAAATTGATAATGGCAAGAAGCCAGTGATAAAAAAGAGGAAGGCTTGTGACATGGATGAGATGGAGCGAGAGATTGATTCAGTTGCTCTAAAAGATAATTCTAATATAAATGTTAGTATCAGCATGAGCGACAAGGAAGTTTTGATTGAAATGAAGTGTCCTTGGAGAGAAGGAGTGCTGCTAGAAATTATGGAAGCAGTAAGTAGTCTCCATTTAGATTTTCATTCAGTTCAGTCATCAGAAGCTGATGGGATTCTTCATCTAAACATTAAATCCAAGTTCAGAGGACCAGCTCTTGCCTCAGCCAAAAAGATCAAACAAGCACTACAAAAAGCAGTTTGGAAGCGTTGA 2202 0.4219 MDHIIATNSTFLKISRTTSILVLGQTLRFCGLLDLFTVALEGGNCCPIWNSEFRRFDLGFAVIISVLNYGEKGVFGGRGVGPRDLEIQLDACSCCYLWKNILNHINKNLGLEMVPENLKKQLSLAVRSIQWSYAIFWSSSASQPGVLEWGEGYYNGDIKTRKTSQAAELNTDQIGLQRSEQLRELYESLATAESSPQTKRPSAALSPEDLTDTEWYYLVCMSFIFNIGEGLPGRTLANGQPIWLYNAHVADSRVFSRSLLAKSASIQTVVCFPFLEGVLELGTTDLVSEDLSLIQSIRTSFLDILDTKVHKTTGVALNTRNDKDVACAVIDHNGFEVGYEVAPNAASPNSSSNAFQANQPVDETFMVERINGGASQVQSWQVMEDELSNCVHNSMNTSDCISQTFAGPEKNASVPKGDHCGQDLQQCKNTKMTLRDVHSDDLHYQSVLSALFKSSDQLIMGVQFQNSHRESSFVGWNNVGSMGCQRPRGGTQQKVLRKVLFEVPRMHIDWLLESQEENDYKEGMRPEADEIGMNHVLSERRRRAKLNERFLTLRSMVPSISKDDKVSILDEAIEYLKKLEKKVRELEARREFKDLETRAKRAPQDVVERTSDNYCNNKIDNGKKPVIKKRKACDMDEMEREIDSVALKDNSNINVSISMSDKEVLIEMKCPWREGVLLEIMEAVSSLHLDFHSVQSSEADGILHLNIKSKFRGPALASAKKIKQALQKAVWKR 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2085 733 Coils Coil 569 596 - -
Glsi05g2085 733 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 530 579 IPR011598 GO:0046983
Glsi05g2085 733 PANTHER TRANSCRIPTION FACTOR TT8 113 729 - -
Glsi05g2085 733 Pfam Helix-loop-helix DNA-binding domain 534 580 IPR011598 GO:0046983
Glsi05g2085 733 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 532 593 IPR036638 GO:0046983
Glsi05g2085 733 Gene3D - 528 598 IPR036638 GO:0046983
Glsi05g2085 733 SMART finulus 536 585 IPR011598 GO:0046983
Glsi05g2085 733 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 118 301 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2085 Glsi-ChrGlsi05 67505508 67512425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2085 114 731 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 51.677 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi05g2085 bHLH-MYC_N 1.9e-53 CL0161