Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2071 ATGGCTGCCAAGTTCTTGGCGTTAACTTGCATCCGCAATGAAGGACGGGGTCACCTATCGCCGCGCCCTCACTACCCGTCGATGCCCAGGTACCCAAAGGGCGTCGCCGTGGGAGAGAGCAGCGTGGAGGGCTCGGAGGTCAAGGCTCTTTTCTCCGTCCTCGGAATGACATGCTCTGCCTGCGCCGGCTCCGTTGAGAAAGCTGTCAAGCGCCTACCTGGAATTCGTGAGGCCCTCGTCGATGTTCTCAATAATCGAGCCTTAGTCCTCTTCTACCCCACCTTCGTTAACGAGGAGACTATTCGCGAGGCCATTGAAGATGCTGGGTTTGAAGCCACATTGCTAATAGATGAGACGACCGAGAGATCCGTTCAAGTATGCCGAATAACCATAGCTGGAATGACTTGCACTTCTTGCTCCTCTACTGTTGAATCAGCTCTGCAAGCAATTCAAGGTGTGCTGAAAGCTCAAGTCGCTTTGGCCACTGAAGAAGCAGAAGTACACTACAATCCGAATTTTGTTAGCTACAATCAGATTCTGGAAGCCATAGAAGACACTGGATTTCAAGGCACACTTATCAGTTCAGGTGAAGACATGAGCAAGATAGACCTCAAAGTTGAGGGTATACAGACGAATCGTTCCATGAGACTCATTGAAAATTCTCTTCAAGCTCTCCCAGGGGTGCAAGGTATAGAATCATATCCCGAGTTGAACAAAATATCACTTTCTTTTAAACCAGACATGACAGGACCCAGGAGTTTCATCAACGTGATTGCGGGAACTGGATCCGGGCGTTTCAAGGCAAAAATATTTCCTCAAGAAGGAGGACGAAGAGATACTCATAGAAGGGACGAAATTAAACAATATTATAGATCCTTCTTATGGAGTTTGATTTTTACGGTTCCCGTCTTTCTAACCTCTATGGTGCTTATGTATATCCCGGGAATTAAACATGGACTAGAAACCAAAGTTGTCAATATGCTTACTGTGGGAGAGATTATACGCTGGGTGCTTTCCACACCAGTGCAGTTTATTATTGGCAGACGATTCTACTCTGGTTCTTACAAAGCATTACGCCGTGGCTCTGCTAACATGGATGTTTTGATTGCCTTGGGAACAAATGCAGCATACTTCTATTCAGTATACTCTATCCTGAGAGCTGCTACCTCTCCGCATTTCGAGGGGACAGATTTCTTTGAGACTAGCGCAATGCTTATTTCATTTATTCTACTCGGAAAGTATCTGGAAGTTTTCGCCAAGGGGAAGACATCCAATGCAATTGCCAAGCTCATGAACTTGACCCCGGACACAGCTATATTGTTAACCCTGGACAATGAAGGAAATGTTATTAATGAAGAAGAAATTGACAGCCGATTGATTCAAAAGAATGATGTGATCAAAATTATTCCCGGCGCAAAAGTGGCTTCCGACGGATTTGTTATCTGGGGCCAGAGCCACGTGAATGAGAGCATGATAACAGGAGAGGCGCGTCCTGTTTCGAAGAGGAAGGGTGACACCGTTATTGGAGGAACTGTGAATGAGAATGGAGTGTTGCATGTCAAGACAACACGAGTTGGATCAGAGAGTGCTCTCTCACAGATTGTTCGACTTGTTGAATCAGCACAGATGGCCAAAGCTCCTGTGCAGAAGTTTGCTGACCGCATTTCAAAATACTTTGTTCCTCTGGTCATTTTAATCTCATTTACAACTTTTCTTGCCTGGTTTTTAGCTGGAAGATTTCATGCTTACCCAAAGTCTTGGATACCATCTTCCATGGACAGTTTTGAACTTGCTTTGCAGTTTGGGATCTCTGTCATGGTCATAGCTTGCCCTTGTGCTTTAGGTCTAGCCACACCAACTGCTGTGATGGTTGGCACTGGAGTTGGTGCATCCCATGGTGTACTGATCAAAGGGGGGCAAGCATTAGAAAGTGCACATAAGGTGAACTGCATTGTTTTTGACAAGACAGGTACTCTCACCATTGGGAAGCCTGTAGTTGTCAACACTAAACTATTGACAAATATGGTACTCCAAGAATTCTATGAACTTGTAGCTGCTGCTGAGGTGAATAGTGAGCATCCATTGGCCAAGGCCATTGTTGAGTATGCCAAAAGATTTAAAGATGAAGAGAGCCCTGCGTGGCCTGAAGCACGAGATTTTGTCTCCATCACTGGCCACGGAGTGAAGGCCATTGTTCGGAACAAGGAAATAGTCGTGGGTAACAAGAGCTTGCTGTCAGACCACAATATTGCAGTTGCTGCGGATGCTGAAGATATACTGGCAGAAGCTGAGGGGATGGCTCAAACTGGAATTTTAGTATCAATTAATGGGGAAGTGGCCGGGGTTGTAGCAGTATCTGATCCATTGAAAACGGGCGTTCAAGAAGTCATTTCAATTCTCAAGTCCATGAACATTAAAAGCATCATGGTGACTGGTGACAACTGGGGAACTGCTAATTCTATAGCAAGGGAGGTCGGAATTGAAGATGTTTATGCTGAGACTAAACCGGAGCAGAAAGCAGAGAAAGTGAAGGATTTGCAGGCTTCTGGCTACACGGTGGCAATGGTTGGGGATGGTATCAATGATTCACCTGCACTTGTAGCAGCAGATGTGGGAATGGCAATTGGTGCCGGCACAGACATTGCAATTGAGGCAGCTGACATTGTTCTCATGAAGAGCAACTTGGAGGATGTTATAACTGCCATCGACCTTTCCAGAAAAACATTTTCTCGTATCCGCCTGAATTACATTTGGGCTTTGGGTTATAATCTGCTTGGCATTCCAATTGCTGCCGGAGCTCTTTTCCCTCCTGCAGGATTCCGATTGCCGCCATGGATTGCTGGGGCTGCAATGGCAGCCTCTTCTGTCAGCGTTGTTTGCTGTTCTCTGCTGTTGAAATATTACAGGAGACCCAAGAAGCTGGACAAACTTGAGATAGGGGGCATAAGAATCGAATGA 2958 0.4598 MAAKFLALTCIRNEGRGHLSPRPHYPSMPRYPKGVAVGESSVEGSEVKALFSVLGMTCSACAGSVEKAVKRLPGIREALVDVLNNRALVLFYPTFVNEETIREAIEDAGFEATLLIDETTERSVQVCRITIAGMTCTSCSSTVESALQAIQGVLKAQVALATEEAEVHYNPNFVSYNQILEAIEDTGFQGTLISSGEDMSKIDLKVEGIQTNRSMRLIENSLQALPGVQGIESYPELNKISLSFKPDMTGPRSFINVIAGTGSGRFKAKIFPQEGGRRDTHRRDEIKQYYRSFLWSLIFTVPVFLTSMVLMYIPGIKHGLETKVVNMLTVGEIIRWVLSTPVQFIIGRRFYSGSYKALRRGSANMDVLIALGTNAAYFYSVYSILRAATSPHFEGTDFFETSAMLISFILLGKYLEVFAKGKTSNAIAKLMNLTPDTAILLTLDNEGNVINEEEIDSRLIQKNDVIKIIPGAKVASDGFVIWGQSHVNESMITGEARPVSKRKGDTVIGGTVNENGVLHVKTTRVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVILISFTTFLAWFLAGRFHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASHGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVVVNTKLLTNMVLQEFYELVAAAEVNSEHPLAKAIVEYAKRFKDEESPAWPEARDFVSITGHGVKAIVRNKEIVVGNKSLLSDHNIAVAADAEDILAEAEGMAQTGILVSINGEVAGVVAVSDPLKTGVQEVISILKSMNIKSIMVTGDNWGTANSIAREVGIEDVYAETKPEQKAEKVKDLQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPPAGFRLPPWIAGAAMAASSVSVVCCSLLLKYYRRPKKLDKLEIGGIRIE 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2071 985 NCBIfam heavy metal translocating P-type ATPase 365 965 IPR027256 GO:0006812|GO:0016020|GO:0019829
Glsi05g2071 985 Gene3D - 736 787 IPR023299 GO:0000166
Glsi05g2071 985 Gene3D - 659 735 IPR023299 GO:0000166
Glsi05g2071 985 Gene3D - 200 262 - -
Glsi05g2071 985 SUPERFAMILY HAD-like 651 962 IPR036412 -
Glsi05g2071 985 NCBIfam copper ion binding protein 129 189 IPR006122 GO:0005507
Glsi05g2071 985 NCBIfam copper ion binding protein 50 112 IPR006122 GO:0005507
Glsi05g2071 985 Pfam E1-E2 ATPase 447 631 - -
Glsi05g2071 985 NCBIfam HAD-IC family P-type ATPase 405 934 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi05g2071 985 SFLD Haloacid Dehalogenase 634 908 - -
Glsi05g2071 985 FunFam Probable copper-transporting ATPase HMA5 748 913 - -
Glsi05g2071 985 SUPERFAMILY Calcium ATPase, transduction domain A 452 538 IPR008250 -
Glsi05g2071 985 Pfam Heavy-metal-associated domain 129 188 IPR006121 GO:0046872
Glsi05g2071 985 Pfam Heavy-metal-associated domain 51 111 IPR006121 GO:0046872
Glsi05g2071 985 SUPERFAMILY HMA, heavy metal-associated domain 123 195 IPR036163 GO:0046872
Glsi05g2071 985 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Glsi05g2071 985 PRINTS P-type cation-transporting ATPase superfamily signature 879 891 - -
Glsi05g2071 985 PRINTS P-type cation-transporting ATPase superfamily signature 652 666 - -
Glsi05g2071 985 PRINTS P-type cation-transporting ATPase superfamily signature 781 792 - -
Glsi05g2071 985 PRINTS P-type cation-transporting ATPase superfamily signature 803 813 - -
Glsi05g2071 985 PRINTS P-type cation-transporting ATPase superfamily signature 856 875 - -
Glsi05g2071 985 CDD P-type_ATPase_Cu-like 291 966 - -
Glsi05g2071 985 FunFam Copper-transporting ATPase HMA5 124 195 - -
Glsi05g2071 985 Gene3D - 619 913 IPR023214 -
Glsi05g2071 985 SUPERFAMILY Calcium ATPase, transmembrane domain M 396 924 IPR023298 -
Glsi05g2071 985 FunFam Copper-transporting ATPase 1, putative 420 542 - -
Glsi05g2071 985 ProSitePatterns Heavy-metal-associated domain. 53 82 IPR017969 GO:0046872
Glsi05g2071 985 ProSitePatterns Heavy-metal-associated domain. 131 160 IPR017969 GO:0046872
Glsi05g2071 985 SUPERFAMILY HMA, heavy metal-associated domain 195 263 IPR036163 GO:0046872
Glsi05g2071 985 ProSiteProfiles Heavy-metal-associated domain profile. 125 191 IPR006121 GO:0046872
Glsi05g2071 985 CDD HMA 129 189 IPR006121 GO:0046872
Glsi05g2071 985 SUPERFAMILY HMA, heavy metal-associated domain 44 114 IPR036163 GO:0046872
Glsi05g2071 985 Pfam haloacid dehalogenase-like hydrolase 648 870 - -
Glsi05g2071 985 ProSitePatterns E1-E2 ATPases phosphorylation site. 654 660 IPR018303 -
Glsi05g2071 985 Gene3D - 125 197 - -
Glsi05g2071 985 Gene3D - 46 118 - -
Glsi05g2071 985 CDD HMA 51 113 IPR006121 GO:0046872
Glsi05g2071 985 ProSiteProfiles Heavy-metal-associated domain profile. 47 113 IPR006121 GO:0046872
Glsi05g2071 985 FunFam Copper-transporting ATPase HMA5 46 117 - -
Glsi05g2071 985 Gene3D - 420 542 - -
Glsi05g2071 985 ProSiteProfiles Heavy-metal-associated domain profile. 200 266 IPR006121 GO:0046872
Glsi05g2071 985 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 981 - -
Glsi05g2071 985 SFLD p-type atpase 634 908 IPR044492 -
Glsi05g2071 985 PRINTS Copper-transporting ATPase 1 signature 74 97 - -
Glsi05g2071 985 PRINTS Copper-transporting ATPase 1 signature 149 170 - -
Glsi05g2071 985 PRINTS Copper-transporting ATPase 1 signature 48 73 - -
Glsi05g2071 985 PRINTS Copper-transporting ATPase 1 signature 103 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2071 Glsi-ChrGlsi05 67432910 67438126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2071 1 985 Primary Pumps ATPases AT1G63440 75.831 0.0 1531